Non-Coding RNA Search

Ss1.1-recc2819c_e13.5

Sequence:


               
               TTAGGGATCCAGCTCATTTTTTTTTTTCCTCCATCCTTGGGATTGGTGGGGAGGCAGGAG
AATGCCCCCTCCCCAAGCCTTTAGTGTGTGCTGAGCTTTCTTTTTGATGCTGACAGGGGA
GGGTGGGGACTGGGATGGTGAGTGAGTTCCCTATATCAGATCTTTTTGGTGGGCACAAGA
CTGCTTGATTTTTGGTTTTACTTTTTTAATGAATGTCCAAATCTATGTTTCCCCCTGCCC
TCCCAGACTTATGTGGCCAGTTGGAAATGTCTGGTTTGTGTTCATCTCTCCCTCATTTCT
GGAGCAGGGGTTGAGACCCCACCACATCTCCTATGCTCTGCATCCACGCCTCTTTTGGAC
ATTAAAGGTCGATTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGGATCCAGCTCATTTTTTTTTTTCCTCCATCCTTGGGATTGGTGGGGAGGCAGGAG
AATGCCCCCTCCCCAAGCCTTTAGTGTGTGCTGAGCTTTCTTTTTGATGCTGACAGGGGA
GGGTGGGGACTGGGATGGTGAGTGAGTTCCCTATATCAGATCTTTTTGGTGGGCACAAGA
CTGCTTGATTTTTGGTTTTACTTTTTTAATGAATGTCCAAATCTATGTTTCCCCCTGCCC
TCCCAGACTTATGTGGCCAGTTGGAAATGTCTGGTTTGTGTTCATCTCTCCCTCATTTCT
GGAGCAGGGGTTGAGACCCCACCACATCTCCTATGCTCTGCATCCACGCCTCTTTTGGAC
ATTAAAGGTCGATTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-107, + strand, RNAz p=0.840148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-107, + strand, RNAz p=0.840148

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-380, gnl|bosTau2|chr19 (4316730-4317114)
               

               
               1-380, gnl|Hg17|chr17 (53523203-53523583)
               

               
               1-380, gnl|Mm7|chr11 (88049815-88049440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr19 (4316730-4317114)
               

               
               1-380, gnl|Hg17|chr17 (53523203-53523583)
               

               
               1-380, gnl|Mm7|chr11 (88049815-88049440)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               hyp (0.714184)
               

               
               mcp (0.511945)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.714184)
               

               
               mcp (0.511945)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	1-380, gnl\|bosTau2\|chr19 (4316730-4317114)
	1-380, gnl\|Hg17\|chr17 (53523203-53523583)
	1-380, gnl\|Mm7\|chr11 (88049815-88049440)

	hyp (0.714184)
	mcp (0.511945)
	ebs (0.354904)
	eye (0.341006)
	fhi (0.339155)
	fce (0.271592)
	cov (0.264306)
	ecc (0.23007)
	ece (0.229305)
	fcc (0.197785)
	eje (0.197668)
	ill (0.175593)
	fbs (0.175346)
	nje (0.16592)
	mga (0.160205)
	cag (0.151194)
	hlv (0.139256)
	cly (0.120642)
	med (0.116252)
	jej (0.0989218)