Non-Coding RNA Search

Ss1.1-recc2819c_h23.5

Sequence:


               
               CAGCACGTTATCTACTCAGCAGAATACCCTTTCATCATCAACATCTTCTGGGCGCACTTC
GACATCCACTCTTTTGCACACAAGCGTGGAGAGTGAGGCGAATCTCCATTCTTCCTCCAG
CACTTTCTCCACCACATCCAGCACAGTCTCTGCACCTCCCCCAGTGGTCAGTGTCTCCTC
CAGTCTCAATAGTGGCAGTAGCCTGGGCCTCAGCCTAGGCAGCAACTCTACCGTCACAGC
CTCCACTCGAAGCTCAGTTGCTACGACTTCAGGAAAAGCTCCTCCCAACCTCCCTCCTGG
GGTCCCGCCGTTGTTGCCTAATCCATATATTATGGCTCCTGGGCTGTTACATGCCTACCC
GCCACAAGTATATGGTTATGATGACTTGCAGATGCTTCAGACAAGATTTCCATTGGATTA
CTACAGCATCCCATTTCCCACCCCCACCACTCCGCTGACTGGGAGGGATGGTAGCCTGGC
CAGCAACCCTTATTCTGGTGACCTCACAAAGTTTGGCCGTGGGGATGCCTCCTCCCCAGC
CCCGGCCACAACCTTGGCCCAACCCCAACAGAACCAGACGCAGACTCACCATACCACGCA
GCAGACATTCCTGAACCCGGCGCTGCCTCCTGGCTACAGTTACACCAGCCTGCCATACTA
CACAGGGGTTCCGGGCCTCCCCAGCACCTTCCAGTATGGGCCTGCTGTGTTCCCTGTGGC
TCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCATCAGCCACCCCTTT
CCAACAGCCAAGTGGATATGGGTCTCATGGATACAACACTGGAAGAAAATATCCACCCCC
TTACAAGCATTTCTGGACGGCAGAGAGCTAATTTGGCCCAAGGCTGGGGGCTGTGTTTTG
TGTGTGTGTATAAATTTGCACTGAAGTCTTGTTTCAGAAACCAGACCACTGAGGAGAGCC
TGCCGAGCTGTGGCCATGGCCTGCGTGGCTTGGGGAAATGAGTTGGTGGATACCTTCTGG
GCTTTTGAACTTGCCCTTCCCCCATTTCCTCTCCCCCATGTGTCTGACCCTGTCTTACCC
ATTTTGAATCCAAGCGGTGCAGCACCTCCGAAGCATCAATGCACACACCTGCTGTTGCTT
TTGATTTCTGGAAGGCATGTAGTTTCAACTTGTAACAAAATATTTGTAGTCTTCAATAAA
CTGTGGTATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACGTTATCTACTCAGCAGAATACCCTTTCATCATCAACATCTTCTGGGCGCACTTC
GACATCCACTCTTTTGCACACAAGCGTGGAGAGTGAGGCGAATCTCCATTCTTCCTCCAG
CACTTTCTCCACCACATCCAGCACAGTCTCTGCACCTCCCCCAGTGGTCAGTGTCTCCTC
CAGTCTCAATAGTGGCAGTAGCCTGGGCCTCAGCCTAGGCAGCAACTCTACCGTCACAGC
CTCCACTCGAAGCTCAGTTGCTACGACTTCAGGAAAAGCTCCTCCCAACCTCCCTCCTGG
GGTCCCGCCGTTGTTGCCTAATCCATATATTATGGCTCCTGGGCTGTTACATGCCTACCC
GCCACAAGTATATGGTTATGATGACTTGCAGATGCTTCAGACAAGATTTCCATTGGATTA
CTACAGCATCCCATTTCCCACCCCCACCACTCCGCTGACTGGGAGGGATGGTAGCCTGGC
CAGCAACCCTTATTCTGGTGACCTCACAAAGTTTGGCCGTGGGGATGCCTCCTCCCCAGC
CCCGGCCACAACCTTGGCCCAACCCCAACAGAACCAGACGCAGACTCACCATACCACGCA
GCAGACATTCCTGAACCCGGCGCTGCCTCCTGGCTACAGTTACACCAGCCTGCCATACTA
CACAGGGGTTCCGGGCCTCCCCAGCACCTTCCAGTATGGGCCTGCTGTGTTCCCTGTGGC
TCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCATCAGCCACCCCTTT
CCAACAGCCAAGTGGATATGGGTCTCATGGATACAACACTGGAAGAAAATATCCACCCCC
TTACAAGCATTTCTGGACGGCAGAGAGCTAATTTGGCCCAAGGCTGGGGGCTGTGTTTTG
TGTGTGTGTATAAATTTGCACTGAAGTCTTGTTTCAGAAACCAGACCACTGAGGAGAGCC
TGCCGAGCTGTGGCCATGGCCTGCGTGGCTTGGGGAAATGAGTTGGTGGATACCTTCTGG
GCTTTTGAACTTGCCCTTCCCCCATTTCCTCTCCCCCATGTGTCTGACCCTGTCTTACCC
ATTTTGAATCCAAGCGGTGCAGCACCTCCGAAGCATCAATGCACACACCTGCTGTTGCTT
TTGATTTCTGGAAGGCATGTAGTTTCAACTTGTAACAAAATATTTGTAGTCTTCAATAAA
CTGTGGTATTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836689|ref|XP_611022.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836689|ref|XP_611022.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               940-1058, + strand, RNAz p=0.798917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               940-1058, + strand, RNAz p=0.798917

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of D63478, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of D63478, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               76-276, gnl|bosTau2|chr3 (8351190-8351390)
               

               
               76-276, gnl|Hg17|chr1 (151042611-151042811)
               

               
               76-276, gnl|Mm7|chr3 (90146156-90145956)
               


               
               488-717, gnl|bosTau2|chr3 (8354451-8354680)
               

               
               488-717, gnl|Hg17|chr1 (151046431-151046660)
               

               
               488-717, gnl|Mm7|chr3 (90139995-90139766)
               


               
               821-1212, gnl|bosTau2|chr3 (8356568-8356963)
               

               
               821-1212, gnl|Hg17|chr1 (151048651-151049044)
               

               
               821-1212, gnl|Mm7|chr3 (90137276-90136884)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-276, gnl|bosTau2|chr3 (8351190-8351390)
               

               
               76-276, gnl|Hg17|chr1 (151042611-151042811)
               

               
               76-276, gnl|Mm7|chr3 (90146156-90145956)
               


               
               488-717, gnl|bosTau2|chr3 (8354451-8354680)
               

               
               488-717, gnl|Hg17|chr1 (151046431-151046660)
               

               
               488-717, gnl|Mm7|chr3 (90139995-90139766)
               


               
               821-1212, gnl|bosTau2|chr3 (8356568-8356963)
               

               
               821-1212, gnl|Hg17|chr1 (151048651-151049044)
               

               
               821-1212, gnl|Mm7|chr3 (90137276-90136884)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	76-276, gnl\|bosTau2\|chr3 (8351190-8351390)
	76-276, gnl\|Hg17\|chr1 (151042611-151042811)
	76-276, gnl\|Mm7\|chr3 (90146156-90145956)

	488-717, gnl\|bosTau2\|chr3 (8354451-8354680)
	488-717, gnl\|Hg17\|chr1 (151046431-151046660)
	488-717, gnl\|Mm7\|chr3 (90139995-90139766)

	821-1212, gnl\|bosTau2\|chr3 (8356568-8356963)
	821-1212, gnl\|Hg17\|chr1 (151048651-151049044)
	821-1212, gnl\|Mm7\|chr3 (90137276-90136884)

	elu (0.385356)
	ecc (0.345105)
	lnt (0.284616)
	mas (0.210305)
	fli (0.202881)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	eye (0.170503)
	cki (0.165235)
	ski (0.146735)
	ste (0.135208)
	ute (0.132784)
	cov (0.132153)
	bla (0.124347)
	cly (0.120642)
	med (0.116252)
	spc (0.113366)
	jej (0.0989218)