Non-Coding RNA Search

Ss1.1-recc2819c_j9.5

Sequence:


               
               CTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCGGCACCACCTGAGGATCCCAGAAGCCG
CCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAGGTAACGGCCGGGGAGTGGGGGCAGGA
GAGGCGGGCCGCGCCCTGCCCTGGGAGCCGGCGGCCGGCCGGGGCCTCAGCCTCCGCGGC
CCGGCCTAGCAGCGAGGGCCTGGCTGGGAGGACAGGCGAGGAGGAGGGAGCGGTGGGCGC
CAGGGTGGGGAGAGGGAAGAGGGGGCGGGAGACCTGGATGGTTTGAATGGAGGCGCTCAG
TGCTCTAGATATCGAGGAAGGAAGACAAGTTGCGAGACCAGAGTTAACTGCCCACCCCCC
GCGTTGGAAAAGCAAGAGGAAGCACAGCTAACGTTCCGAACCACGCACCGTCCGCTGTTA
CCGGAGCGATGGGATTGGTGTGTTGGTCGGGCCCAAGTCCCTCCTCCGTGTAGAGCGCTC
TTTAAGCTACTCTGCGCTGAGTGCTTTTTCTCCCTCCTGCTTGATGACTCTTCTCAGACT
TTCCTTTCTAGTTTCCTTACCTCCTGCACGTTGAGGAGCTTTAGTTTCTATTTTTATAGT
CGCGTTTTCCCACGCCTTTCAACTCCCCTTCCATCCTCTGGCAGGGCCCACCCTTTTCTA
ATAATAGCCCTTTCTTGTGACTCTACCAAATAAGATTTAGCAAGCTTTTTTAATGACACT
CCCCTCGTGGCCATGTGGAGGGCC------------GAGAAATTGGAN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCGGCACCACCTGAGGATCCCAGAAGCCG
CCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAGGTAACGGCCGGGGAGTGGGGGCAGGA
GAGGCGGGCCGCGCCCTGCCCTGGGAGCCGGCGGCCGGCCGGGGCCTCAGCCTCCGCGGC
CCGGCCTAGCAGCGAGGGCCTGGCTGGGAGGACAGGCGAGGAGGAGGGAGCGGTGGGCGC
CAGGGTGGGGAGAGGGAAGAGGGGGCGGGAGACCTGGATGGTTTGAATGGAGGCGCTCAG
TGCTCTAGATATCGAGGAAGGAAGACAAGTTGCGAGACCAGAGTTAACTGCCCACCCCCC
GCGTTGGAAAAGCAAGAGGAAGCACAGCTAACGTTCCGAACCACGCACCGTCCGCTGTTA
CCGGAGCGATGGGATTGGTGTGTTGGTCGGGCCCAAGTCCCTCCTCCGTGTAGAGCGCTC
TTTAAGCTACTCTGCGCTGAGTGCTTTTTCTCCCTCCTGCTTGATGACTCTTCTCAGACT
TTCCTTTCTAGTTTCCTTACCTCCTGCACGTTGAGGAGCTTTAGTTTCTATTTTTATAGT
CGCGTTTTCCCACGCCTTTCAACTCCCCTTCCATCCTCTGGCAGGGCCCACCCTTTTCTA
ATAATAGCCCTTTCTTGTGACTCTACCAAATAAGATTTAGCAAGCTTTTTTAATGACACT
CCCCTCGTGGCCATGTGGAGGGCC------------GAGAAATTGGAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-566, gnl|bosTau2|chr12 (17897402-17896820)
               

               
               1-566, gnl|Hg17|chr13 (27094054-27094580)
               

               
               1-566, gnl|Mm7|chr5 (145971993-145972560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr12 (17897402-17896820)
               

               
               1-566, gnl|Hg17|chr13 (27094054-27094580)
               

               
               1-566, gnl|Mm7|chr5 (145971993-145972560)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-566, gnl\|bosTau2\|chr12 (17897402-17896820)
	1-566, gnl\|Hg17\|chr13 (27094054-27094580)
	1-566, gnl\|Mm7\|chr5 (145971993-145972560)