Non-Coding RNA Search

Ss1.1-recc2819c_p7.5

Sequence:


               
               CGCTTGGAGCGCCGGCCGGGCCGAGCCGAGCCACCATGGGGAAAATCGCGCTGCAGCTCA
AAGCCACGCTGGAGAATGTCACCAACCTCCGGCCAGTGGGCGAGGACTTCCGGTGGTACC
TGAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGAGAAGTGGCAGTACATTCGACTGA
TGGATAGCGTGGCACTGAAGGGGGGTCGTGGCAGTGCCTCCATGGTCCAGAAGTGCAAGC
TGTGTTCAAGGGAAAACTCCATTGAGATCTTGAGCCACACCATCAAAGCTTACAATGCCG
AAGACAACGAGAAGTTCAAGACGATAGTAGAGTTTGAGTGCCGGGGACTTGAACCAGTTG
ATTTCCAGCCTCAGGCTGGATTTGCTGCTGAGGGTGTGGAATCAGGAACAGTCTTCAGTG
ACATTAATCTTCAGGAGAAGGACTGGACTGACTATGACGAGAAGGCTCAGGAGTCTGTGG
GAATCTACGAGGTCACCCACCAGTTTGTGAAATGCTGAACCCTCTTCCTGCACACCTGCC
TCTGAGAACGGAAAAAGGACAACGGGCTCCGAGCAGCAGAGACAGGTCCCTTTATCCCTC
GTCTCCTGGCAGTTGTCCAGGCCTCACAGCCTGCATGCTGGGCTCTGTCACAGCTTCCCA
AGTACTACAATAAAGCCCCGGTTTGTGCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTGGAGCGCCGGCCGGGCCGAGCCGAGCCACCATGGGGAAAATCGCGCTGCAGCTCA
AAGCCACGCTGGAGAATGTCACCAACCTCCGGCCAGTGGGCGAGGACTTCCGGTGGTACC
TGAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGAGAAGTGGCAGTACATTCGACTGA
TGGATAGCGTGGCACTGAAGGGGGGTCGTGGCAGTGCCTCCATGGTCCAGAAGTGCAAGC
TGTGTTCAAGGGAAAACTCCATTGAGATCTTGAGCCACACCATCAAAGCTTACAATGCCG
AAGACAACGAGAAGTTCAAGACGATAGTAGAGTTTGAGTGCCGGGGACTTGAACCAGTTG
ATTTCCAGCCTCAGGCTGGATTTGCTGCTGAGGGTGTGGAATCAGGAACAGTCTTCAGTG
ACATTAATCTTCAGGAGAAGGACTGGACTGACTATGACGAGAAGGCTCAGGAGTCTGTGG
GAATCTACGAGGTCACCCACCAGTTTGTGAAATGCTGAACCCTCTTCCTGCACACCTGCC
TCTGAGAACGGAAAAAGGACAACGGGCTCCGAGCAGCAGAGACAGGTCCCTTTATCCCTC
GTCTCCTGGCAGTTGTCCAGGCCTCACAGCCTGCATGCTGGGCTCTGTCACAGCTTCCCA
AGTACTACAATAAAGCCCCGGTTTGTGCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26341244|dbj|BAC34284.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26341244|dbj|BAC34284.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               439-692, gnl|bosTau2|chr12 (48400464-48400715)
               

               
               439-692, gnl|Hg17|chr1 (53392431-53392166)
               

               
               439-692, gnl|Mm7|chr4 (107273308-107273557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               439-692, gnl|bosTau2|chr12 (48400464-48400715)
               

               
               439-692, gnl|Hg17|chr1 (53392431-53392166)
               

               
               439-692, gnl|Mm7|chr4 (107273308-107273557)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fhi (0.678311)
               

               
               hlv (0.417769)
               

               
               tes (0.415628)
               

               
               nlu (0.383362)
               

               
               nbm (0.297974)
               

               
               eje (0.296501)
               

               
               che (0.272628)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.678311)
               

               
               hlv (0.417769)
               

               
               tes (0.415628)
               

               
               nlu (0.383362)
               

               
               nbm (0.297974)
               

               
               eje (0.296501)
               

               
               che (0.272628)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	439-692, gnl\|bosTau2\|chr12 (48400464-48400715)
	439-692, gnl\|Hg17\|chr1 (53392431-53392166)
	439-692, gnl\|Mm7\|chr4 (107273308-107273557)

	fhi (0.678311)
	hlv (0.417769)
	tes (0.415628)
	nlu (0.383362)
	nbm (0.297974)
	eje (0.296501)
	che (0.272628)
	pgl (0.236967)
	ecc (0.23007)
	col (0.195008)
	nep (0.183925)
	ton (0.1755)
	fbs (0.175346)
	eli (0.151814)
	cag (0.151194)
	cst (0.140036)
	nmm (0.132802)
	ese (0.126502)
	med (0.116252)