Ss1.1-recc2820c_a8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGCAGCAGGCGGCCCTGGTAGCGGCTCACAGTGCCTACCTCAGCCCCATGGCCACCA TGGCTGCCGTGCAGATGCAGCACATGGCCGCCATCAATGCCAATGGCCTCATCGCCACCC CCATCACCCCATCCTCAGGAACCAGCACCCCTCCTGCCATCGCTGCCACACCTGTCTCTG CGATCCCTGCTGCCCTGGGCGTCAACGGCTACAGCCCGGTGCCCACCCAGCCCACTGGGC AGCCTGCCCCTGATGCTCTGTATCCCAACGGGGTCCACCCCTACCCAGCTCAGAGCCCCG CGGCCCCCGTGGACCCCCTGCAGCAGGCCTATGCGGGGATGCAGCACTACACAGCAGCCT ACCCGGCAGCCTACAGCCTGGTGGCACCTGCGTTCCCACAGCCTCCTGCCCTGGTGGCCC AGCAGCCCCCACCTCCTCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGC AACGGGAAGGCCCTGACGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACTG ACTCAGAGATCCTGCAGATGTTTGTCCCCTTTGGCCACGTCATCTCAGCCAAAGTCTTTG TTGATCGGGCCACCAATCAGAGCAAGTGTTTTGGCTTTGTGAGTTTCGACAATCCAGCCA GTGCCCAGGCTGCCATCCAGGCCATGAACGGTTTCCAGATTGGCATGAAGCGCCTCAAAG TCCAGCTAAAGCGACCCAAGGATGCCAACCGGCCCTACTGAGGGCCCCCAGGTCTGGAGA CACCAGAGGAAGGGGCACCTCACCCCCTCTCCCCACGACTGGCCCCAGCCCTCTCTGCAC ATCTGCCCTGGGCCTTGACTGGGCTCTGGGGCAAACGCTGCTTCATGGCCCTTGGGGGCA CAGGACACCGGCCTGCTGCCACCACCCCGTCTCCCCTGAAGGGCCTGTTTCCTCCCAGGT GCCCTTTTGGCCTTTGTGAGGGAGCAAGGAACAGGCTCGAAGGCTCCGGGGTACCTGCCC TCTGATGGGGCTCCTGTGCCGGGCCTTGTGCGCCCAGCTCTCGCACTTGCCTCCCCCACC AGTGGGCCTGTTCTACCTGTGCTGCCGGGAGGGCAGCAGGGGCCTCCCCCACGCGCCCCA GCTCCCCCAGCCCCAGCCTCTTCCCCTCACGAGGGGTTTCTCAGAAGCTGGTTCTCGCAC CCCCTGCCACCCTCGGCTAGAGGTAGGATATCCCTGAACCCTGGGCTCCCAGCCCTAAAA CTCACTGCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGCAGCAGGCGGCCCTGGTAGCGGCTCACAGTGCCTACCTCAGCCCCATGGCCACCA TGGCTGCCGTGCAGATGCAGCACATGGCCGCCATCAATGCCAATGGCCTCATCGCCACCC CCATCACCCCATCCTCAGGAACCAGCACCCCTCCTGCCATCGCTGCCACACCTGTCTCTG CGATCCCTGCTGCCCTGGGCGTCAACGGCTACAGCCCGGTGCCCACCCAGCCCACTGGGC AGCCTGCCCCTGATGCTCTGTATCCCAACGGGGTCCACCCCTACCCAGCTCAGAGCCCCG CGGCCCCCGTGGACCCCCTGCAGCAGGCCTATGCGGGGATGCAGCACTACACAGCAGCCT ACCCGGCAGCCTACAGCCTGGTGGCACCTGCGTTCCCACAGCCTCCTGCCCTGGTGGCCC AGCAGCCCCCACCTCCTCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGC AACGGGAAGGCCCTGACGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACTG ACTCAGAGATCCTGCAGATGTTTGTCCCCTTTGGCCACGTCATCTCAGCCAAAGTCTTTG TTGATCGGGCCACCAATCAGAGCAAGTGTTTTGGCTTTGTGAGTTTCGACAATCCAGCCA GTGCCCAGGCTGCCATCCAGGCCATGAACGGTTTCCAGATTGGCATGAAGCGCCTCAAAG TCCAGCTAAAGCGACCCAAGGATGCCAACCGGCCCTACTGAGGGCCCCCAGGTCTGGAGA CACCAGAGGAAGGGGCACCTCACCCCCTCTCCCCACGACTGGCCCCAGCCCTCTCTGCAC ATCTGCCCTGGGCCTTGACTGGGCTCTGGGGCAAACGCTGCTTCATGGCCCTTGGGGGCA CAGGACACCGGCCTGCTGCCACCACCCCGTCTCCCCTGAAGGGCCTGTTTCCTCCCAGGT GCCCTTTTGGCCTTTGTGAGGGAGCAAGGAACAGGCTCGAAGGCTCCGGGGTACCTGCCC TCTGATGGGGCTCCTGTGCCGGGCCTTGTGCGCCCAGCTCTCGCACTTGCCTCCCCCACC AGTGGGCCTGTTCTACCTGTGCTGCCGGGAGGGCAGCAGGGGCCTCCCCCACGCGCCCCA GCTCCCCCAGCCCCAGCCTCTTCCCCTCACGAGGGGTTTCTCAGAAGCTGGTTCTCGCAC CCCCTGCCACCCTCGGCTAGAGGTAGGATATCCCTGAACCCTGGGCTCCCAGCCCTAAAA CTCACTGCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 132-288, - strand, RNAz p=0.944318 | |
| 769-1235, - strand, RNAz p=0.999998 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 132-288, - strand, RNAz p=0.944318 | |
| 769-1235, - strand, RNAz p=0.999998 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 132-288, gnl|bosTau2|chr3 (15130709-15130865) | |
| 132-288, gnl|Hg17|chr1 (148492850-148492694) | |
| 132-288, gnl|Mm7|chr3 (94361077-94361233) | |
| 488-634, gnl|bosTau2|chr10 (10680024-10679878) | |
| 488-634, gnl|canFam2|chr30 (38785106-38785262) | |
| 488-634, gnl|danRer3|chr4 (26634549-26634396) | |
| 488-634, gnl|dasNov1|scaffold_776 (114637-114793) | |
| 488-634, gnl|echTel1|scaffold_313239 (39842-39998) | |
| 488-634, gnl|fr1|chrUn (114792572-114792731) | |
| 488-634, gnl|galGal2|chr10 (1065345-1065176) | |
| 488-634, gnl|hg17|chr15 (70367693-70367852) | |
| 488-634, gnl|Hg17|chr15 (70367848-70367702) | |
| 488-634, gnl|loxAfr1|scaffold_5520 (100654-100810) | |
| 488-634, gnl|mm7|chr9 (59631379-59631223) | |
| 488-634, gnl|Mm7|chr9 (59631225-59631371) | |
| 488-634, gnl|monDom2|scaffold_14 (16926431-16926280) | |
| 488-634, gnl|oryCun1|scaffold_136968 (4193-4039) | |
| 488-634, gnl|panTro1|chr16 (71008110-71008269) | |
| 488-634, gnl|rheMac2|chr7 (50936901-50937060) | |
| 488-634, gnl|rn3|chr8 (63450592-63450436) | |
| 488-634, gnl|tetNig1|chr8 (8701976-8702129) | |
| 488-634, gnl|xenTro1|scaffold_1834 (68633-68474) | |
| 769-1272, gnl|bosTau2|chr3 (15134751-15135251) | |
| 769-1272, gnl|Hg17|chr1 (148489000-148488470) | |
| 769-1272, gnl|Mm7|chr3 (94365079-94365621) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-288, gnl|bosTau2|chr3 (15130709-15130865) | |
| 132-288, gnl|Hg17|chr1 (148492850-148492694) | |
| 132-288, gnl|Mm7|chr3 (94361077-94361233) | |
| 488-634, gnl|bosTau2|chr10 (10680024-10679878) | |
| 488-634, gnl|canFam2|chr30 (38785106-38785262) | |
| 488-634, gnl|danRer3|chr4 (26634549-26634396) | |
| 488-634, gnl|dasNov1|scaffold_776 (114637-114793) | |
| 488-634, gnl|echTel1|scaffold_313239 (39842-39998) | |
| 488-634, gnl|fr1|chrUn (114792572-114792731) | |
| 488-634, gnl|galGal2|chr10 (1065345-1065176) | |
| 488-634, gnl|hg17|chr15 (70367693-70367852) | |
| 488-634, gnl|Hg17|chr15 (70367848-70367702) | |
| 488-634, gnl|loxAfr1|scaffold_5520 (100654-100810) | |
| 488-634, gnl|mm7|chr9 (59631379-59631223) | |
| 488-634, gnl|Mm7|chr9 (59631225-59631371) | |
| 488-634, gnl|monDom2|scaffold_14 (16926431-16926280) | |
| 488-634, gnl|oryCun1|scaffold_136968 (4193-4039) | |
| 488-634, gnl|panTro1|chr16 (71008110-71008269) | |
| 488-634, gnl|rheMac2|chr7 (50936901-50937060) | |
| 488-634, gnl|rn3|chr8 (63450592-63450436) | |
| 488-634, gnl|tetNig1|chr8 (8701976-8702129) | |
| 488-634, gnl|xenTro1|scaffold_1834 (68633-68474) | |
| 769-1272, gnl|bosTau2|chr3 (15134751-15135251) | |
| 769-1272, gnl|Hg17|chr1 (148489000-148488470) | |
| 769-1272, gnl|Mm7|chr3 (94365079-94365621) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| ecc (0.115035) |