Non-Coding RNA Search

Ss1.1-recc2820c_c10.5

Sequence:


               
               GTATAACAACAATAATCCCTTGCTCTTCCCCCTCTTTGAAGGCCTGCAGAACAACCAAGG
CGAGCCAGGCCGTGCTGATTGTAGAGGTATAATGTGATCTGGGTTCTGCACGTCCCGTTC
AGTGGATGAGCGTTTCTTCTCCTCCTGCGTCTGTTGCCCACTCGAATGCAAAGGAAAACA
CTTTTGCAGCCAAGCAAGAGAAGCTGCAACAGCAAGACACGCCCCGTCAACCAGTTTCTG
AGAAAGAGAGAGAATTTCCCACTGGGAAAGGAGGAGGAGGAGGAACACTGGATTATTTGT
GGGGTCTTGACACTGGGCTGCAAAATCCACCTTCCTTTCTTCCTCTCCCTCCCCCCTCGA
CTCTCCCACGTCTTGTCGTCATTTTCAGTCTGGGTTCCCTCCTCCCTCTTCCCCACCCCT
TGCCCCTCACCCTCTGTGTCCTGGTCCTGCTGAGGGCCCCTGCAGATGACTCTCATTGGA
AACCAGAAAAAGGAAAAAGAAGAGCAGGAACGTAAAACCAAGCCACAGGAAGGGAAGTAG
ACCTTGTATGTTTATGGGTTCTCATTATGAAGGTGCAGCTTGTAGGAGATTTGTATGGAT
GTGCTTTTAAGTTATGTATATTACCTATAACAGGAAACAAATATTAAAATAAACAGTGCT
GGTAAGTATGAAGCTGACATTTTAAAATTATAATTATCTGACTGTGATTGATGTATCCCA
AGGTTCCTAGATCTCACCGAACCGGCCCAGCCAAAGAGACCCAGACTCTGGCTGTGGGTG
GCTCACAGTAGGAGCTCATGGTTCAGTGTAGAAATACAGTGTGTGGTGTTTGTAATTGGT
TGATTAGTGGGGAGGGGCGGGGTCCCCAAGTGGAGAGGCAGGGGTTTGGCAGGAAGGAAG
CAACACGGATGTGGTTCAAGATGCCTTCTCCCCTGGGCAATAGCAACCAGGCCTGGTCTG
TGCTCAGGCGTGGGGTCCAGAGTTAGTTTTGCCACCCAGGTCCCCGGGCTCAGTCCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATAACAACAATAATCCCTTGCTCTTCCCCCTCTTTGAAGGCCTGCAGAACAACCAAGG
CGAGCCAGGCCGTGCTGATTGTAGAGGTATAATGTGATCTGGGTTCTGCACGTCCCGTTC
AGTGGATGAGCGTTTCTTCTCCTCCTGCGTCTGTTGCCCACTCGAATGCAAAGGAAAACA
CTTTTGCAGCCAAGCAAGAGAAGCTGCAACAGCAAGACACGCCCCGTCAACCAGTTTCTG
AGAAAGAGAGAGAATTTCCCACTGGGAAAGGAGGAGGAGGAGGAACACTGGATTATTTGT
GGGGTCTTGACACTGGGCTGCAAAATCCACCTTCCTTTCTTCCTCTCCCTCCCCCCTCGA
CTCTCCCACGTCTTGTCGTCATTTTCAGTCTGGGTTCCCTCCTCCCTCTTCCCCACCCCT
TGCCCCTCACCCTCTGTGTCCTGGTCCTGCTGAGGGCCCCTGCAGATGACTCTCATTGGA
AACCAGAAAAAGGAAAAAGAAGAGCAGGAACGTAAAACCAAGCCACAGGAAGGGAAGTAG
ACCTTGTATGTTTATGGGTTCTCATTATGAAGGTGCAGCTTGTAGGAGATTTGTATGGAT
GTGCTTTTAAGTTATGTATATTACCTATAACAGGAAACAAATATTAAAATAAACAGTGCT
GGTAAGTATGAAGCTGACATTTTAAAATTATAATTATCTGACTGTGATTGATGTATCCCA
AGGTTCCTAGATCTCACCGAACCGGCCCAGCCAAAGAGACCCAGACTCTGGCTGTGGGTG
GCTCACAGTAGGAGCTCATGGTTCAGTGTAGAAATACAGTGTGTGGTGTTTGTAATTGGT
TGATTAGTGGGGAGGGGCGGGGTCCCCAAGTGGAGAGGCAGGGGTTTGGCAGGAAGGAAG
CAACACGGATGTGGTTCAAGATGCCTTCTCCCCTGGGCAATAGCAACCAGGCCTGGTCTG
TGCTCAGGCGTGGGGTCCAGAGTTAGTTTTGCCACCCAGGTCCCCGGGCTCAGTCCCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               181-283, - strand, RNAz p=0.584998
               

               
               837-933, - strand, RNAz p=0.943889

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-283, - strand, RNAz p=0.584998
               

               
               837-933, - strand, RNAz p=0.943889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-968, gnl|bosTau2|chr13 (44366435-44367402)
               

               
               2-968, gnl|Hg17|chr20 (34280998-34281992)
               

               
               2-968, gnl|Mm7|chr2 (156280991-156282001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-968, gnl|bosTau2|chr13 (44366435-44367402)
               

               
               2-968, gnl|Hg17|chr20 (34280998-34281992)
               

               
               2-968, gnl|Mm7|chr2 (156280991-156282001)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               cty (0.20816)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cty (0.20816)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	181-283, - strand, RNAz p=0.584998
	837-933, - strand, RNAz p=0.943889

	2-968, gnl\|bosTau2\|chr13 (44366435-44367402)
	2-968, gnl\|Hg17\|chr20 (34280998-34281992)
	2-968, gnl\|Mm7\|chr2 (156280991-156282001)

	amn (0.417711)
	cty (0.20816)
	che (0.136314)
	pla (0.133672)
	ese (0.126502)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)