Ss1.1-recc2820c_k10.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AGCCAATAGGTTGAACCTGCCCTTTCAACGAGCAGCCCAGGTAGTGGGCATACAGGTCAG CAGGTAACACTGACAGCCATGCATCCTGATGCCCCTTTCTTAGAATCGGGGCTGCCCCTG GCCAGGCCTGTCCTGGGTGCTGGAAACGGGGGTAGGGCCTGGCCAGAGAGCAGGGAGCCG GGCTTGGAGTGGTGGGGAGCCCCTGAGACCCTTCCTGCCTGCCCCTGCAGGGCACCCTGG AGATCCTGTACCCCGATGCCCACCTCTCGGCTGAGGACTTCAACATCTACGGGCACGGGG GCCGACAGTTCTGGCTGGTCAGCTCCTGCTTCTTCTTCCTGGTCTACTCCCTGGTGGTCG TGCTCCCCAAGACCCCGCTGAAGGAGCGCATCTCGCTGCCCTCGCGGAGGAGCTTCTACG TGTACGCGGGCATCCTGGCGCTGCTCAACCTGCTGCAGGGGCTGGGGAGCGCGCTGCTGT GCGCGGACATCATCGAGGGGCTCTGCTGCGTGGACGCCACCACCTTCCTCTACTTCAGCT TCTTCGCTCCCCTCATCTACGTGGCCTTCCTGCGGGGCTTCTTCGGCTCAGAGCCCAAGA TCCTCTTCTCCTACAAATGCCAAGTGGACGAGGCCGAGGAACCGGACATGCACCTGCCCC AGCCCTATGCGGTGGCCCGGCGGGAGGGCCTGGAGGCGGCAGGGGCTGCCAGCACGCAGT TCGACTCGGCCAGTGGGGTGGCCTACCTGGATGACGTGGCTTCCATGCCCTGCCACGCAG GCAGCATCAACAGCACAGACAGCGAGCGCTGGAAGGCCATCAATGCCTAGTGTTCAGCCC TGGCCAGAGGGCCTGCGGGCACCGGTGGAGAGAAGCCAGAGGGGAGGTGGGGAGCAGAGC CCCCCGCACAGGTGGGCAAGGGGACAGGACTGTGTGTGGGGAACAGTCCTGTCCTGCCCT CGGTCCCCCACTTGCTGTCTTCCATCTCTGCTCTAGCTGGGGCCTCCCCTCCACCCACCT GCCCTCACCCTGCTTGGCCACTTGGCCCCGACTTTGATGTTCTAGGGCCGGGCCTGGCCG GGCTGGCCAAGGGCTCCCCCCAGCTCCCTGCAGCCTGGGCTTCCAGTACTGTCTGGCCCT CCTCATCTTCCCCTGCTTCCCAAAGCCCACTCTGGTGGATGGGCTTAAGTGTGTATATTT TCGTGATCTATTTTCTAATAAAAAGGAAAAGGAGAAGGAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AGCCAATAGGTTGAACCTGCCCTTTCAACGAGCAGCCCAGGTAGTGGGCATACAGGTCAG CAGGTAACACTGACAGCCATGCATCCTGATGCCCCTTTCTTAGAATCGGGGCTGCCCCTG GCCAGGCCTGTCCTGGGTGCTGGAAACGGGGGTAGGGCCTGGCCAGAGAGCAGGGAGCCG GGCTTGGAGTGGTGGGGAGCCCCTGAGACCCTTCCTGCCTGCCCCTGCAGGGCACCCTGG AGATCCTGTACCCCGATGCCCACCTCTCGGCTGAGGACTTCAACATCTACGGGCACGGGG GCCGACAGTTCTGGCTGGTCAGCTCCTGCTTCTTCTTCCTGGTCTACTCCCTGGTGGTCG TGCTCCCCAAGACCCCGCTGAAGGAGCGCATCTCGCTGCCCTCGCGGAGGAGCTTCTACG TGTACGCGGGCATCCTGGCGCTGCTCAACCTGCTGCAGGGGCTGGGGAGCGCGCTGCTGT GCGCGGACATCATCGAGGGGCTCTGCTGCGTGGACGCCACCACCTTCCTCTACTTCAGCT TCTTCGCTCCCCTCATCTACGTGGCCTTCCTGCGGGGCTTCTTCGGCTCAGAGCCCAAGA TCCTCTTCTCCTACAAATGCCAAGTGGACGAGGCCGAGGAACCGGACATGCACCTGCCCC AGCCCTATGCGGTGGCCCGGCGGGAGGGCCTGGAGGCGGCAGGGGCTGCCAGCACGCAGT TCGACTCGGCCAGTGGGGTGGCCTACCTGGATGACGTGGCTTCCATGCCCTGCCACGCAG GCAGCATCAACAGCACAGACAGCGAGCGCTGGAAGGCCATCAATGCCTAGTGTTCAGCCC TGGCCAGAGGGCCTGCGGGCACCGGTGGAGAGAAGCCAGAGGGGAGGTGGGGAGCAGAGC CCCCCGCACAGGTGGGCAAGGGGACAGGACTGTGTGTGGGGAACAGTCCTGTCCTGCCCT CGGTCCCCCACTTGCTGTCTTCCATCTCTGCTCTAGCTGGGGCCTCCCCTCCACCCACCT GCCCTCACCCTGCTTGGCCACTTGGCCCCGACTTTGATGTTCTAGGGCCGGGCCTGGCCG GGCTGGCCAAGGGCTCCCCCCAGCTCCCTGCAGCCTGGGCTTCCAGTACTGTCTGGCCCT CCTCATCTTCCCCTGCTTCCCAAAGCCCACTCTGGTGGATGGGCTTAAGTGTGTATATTT TCGTGATCTATTTTCTAATAAAAAGGAAAAGGAGAAGGAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1097-1232, + strand, RNAz p=0.644791 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1097-1232, + strand, RNAz p=0.644791 |
Aligned organism(s): 27 entry(ies) | More info |
Aligned organism(s): 27 entry(ies) | Help | Less info |
586-828, gnl|bosTau2|chr22 (47796417-47796656) | |
586-828, gnl|canFam2|chr20 (4665359-4665650) | |
586-828, gnl|danRer3|chrNA (133881127-133880850) | |
586-828, gnl|echTel1|scaffold_201660 (1766-1452) | |
586-828, gnl|fr1|chrUn (192031198-192030888) | |
586-828, gnl|galGal2|chr12 (9785871-9785635) | |
586-828, gnl|hg17|chr3 (128775063-128775380) | |
586-828, gnl|Hg17|chr3 (128775330-128775064) | |
586-828, gnl|loxAfr1|scaffold_5219 (57847-57533) | |
586-828, gnl|mm7|chr6 (88987041-88986740) | |
586-828, gnl|Mm7|chr6 (88986775-88987038) | |
586-828, gnl|monDom2|scaffold_5 (45934763-45935065) | |
586-828, gnl|panTro1|chr2 (130650905-130651222) | |
586-828, gnl|rheMac2|chr11 (87268079-87267762) | |
586-828, gnl|rn3|chr4 (123250531-123250235) | |
586-828, gnl|xenTro1|scaffold_72 (558673-558926) | |
1097-1232, gnl|bosTau2|chr22 (47796852-47796987) | |
1097-1232, gnl|canFam2|chr20 (4664916-4665076) | |
1097-1232, gnl|dasNov1|scaffold_85469 (40841-40681) | |
1097-1232, gnl|hg17|chr3 (128774611-128774772) | |
1097-1232, gnl|Hg17|chr3 (128774783-128774617) | |
1097-1232, gnl|loxAfr1|scaffold_5219 (58257-58115) | |
1097-1232, gnl|mm7|chr6 (88987328-88987231) | |
1097-1232, gnl|Mm7|chr6 (88987192-88987321) | |
1097-1232, gnl|panTro1|chr2 (130650453-130650614) | |
1097-1232, gnl|rheMac2|chr11 (87268528-87268369) | |
1097-1232, gnl|rn3|chr4 (123250839-123250746) |
Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
586-828, gnl|bosTau2|chr22 (47796417-47796656) | |
586-828, gnl|canFam2|chr20 (4665359-4665650) | |
586-828, gnl|danRer3|chrNA (133881127-133880850) | |
586-828, gnl|echTel1|scaffold_201660 (1766-1452) | |
586-828, gnl|fr1|chrUn (192031198-192030888) | |
586-828, gnl|galGal2|chr12 (9785871-9785635) | |
586-828, gnl|hg17|chr3 (128775063-128775380) | |
586-828, gnl|Hg17|chr3 (128775330-128775064) | |
586-828, gnl|loxAfr1|scaffold_5219 (57847-57533) | |
586-828, gnl|mm7|chr6 (88987041-88986740) | |
586-828, gnl|Mm7|chr6 (88986775-88987038) | |
586-828, gnl|monDom2|scaffold_5 (45934763-45935065) | |
586-828, gnl|panTro1|chr2 (130650905-130651222) | |
586-828, gnl|rheMac2|chr11 (87268079-87267762) | |
586-828, gnl|rn3|chr4 (123250531-123250235) | |
586-828, gnl|xenTro1|scaffold_72 (558673-558926) | |
1097-1232, gnl|bosTau2|chr22 (47796852-47796987) | |
1097-1232, gnl|canFam2|chr20 (4664916-4665076) | |
1097-1232, gnl|dasNov1|scaffold_85469 (40841-40681) | |
1097-1232, gnl|hg17|chr3 (128774611-128774772) | |
1097-1232, gnl|Hg17|chr3 (128774783-128774617) | |
1097-1232, gnl|loxAfr1|scaffold_5219 (58257-58115) | |
1097-1232, gnl|mm7|chr6 (88987328-88987231) | |
1097-1232, gnl|Mm7|chr6 (88987192-88987321) | |
1097-1232, gnl|panTro1|chr2 (130650453-130650614) | |
1097-1232, gnl|rheMac2|chr11 (87268528-87268369) | |
1097-1232, gnl|rn3|chr4 (123250839-123250746) |
Expressed library(ies): 8 entry(ies) | More info |
Expressed library(ies): 8 entry(ies) | Help | Less info |
nlu (0.383362) | |
ebs (0.236602) | |
mcp (0.170648) | |
nca (0.136874) | |
ute (0.132784) | |
cov (0.132153) | |
ecc (0.115035) | |
jca (0.11396) |
Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nlu (0.383362) | |
ebs (0.236602) | |
mcp (0.170648) | |
nca (0.136874) | |
ute (0.132784) | |
cov (0.132153) | |
ecc (0.115035) | |
jca (0.11396) |