Non-Coding RNA Search

Ss1.1-recc2820c_k2.5.5

Sequence:


               
               AGCCGTTCTGTGTGTCTGCTGCCAGCTGCTGGTCTCCACACCCTCAACCGTTCTCAACCC
CTCCTCCCCCCGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTACCAGCCATC
CCCTGCCCCACTGCTGAATGAAGGCCATTCCAAGCGCCGCTCCTCCCTCCATTCCTCTCA
GCGTATTGCTGCAGGGCCACGCCCCTTTTAGTGCTGTGCGGGCCCCGCCCACCACCACGG
CCCCTCCCAGCCCTCTGCAGGTGGGAGGGGCCAGCTGCCTCTTTAGGACAGTTGCTTCCT
CCATTGATCCGAACCACCCTCCCCTCCCAGTGGAATGGAGCTCTAGAGAGCGCGAGCACT
GCCCTCCTCCATCGTCTGTGTCAGCCGGCCCTAGCCCATCTCTAGGGCAAAAGAACTCGC
CAAGAGCTTCTTCTGCCCTTGCAGACCCATACCAGCTACTTGTAACCAACCATCTTCAAG
GGAAATGGCCTTGCTCCCTGTCCATTCATCTGCATGAGCTACTCTTGGCTCCCTTAGAGG
GTCAAGAAAGCAACTTTTCTGCTTGTCAGATTTGTTGACGTCAGCTGTGTGAGCCCCAGT
GTGGGACTAGGGTGTCTCCTTCATTGCTTAAATCTTATTTATAAAGATAGGTCATTAGAG
ATGTGGGGGAGCAAGGGCTAGGATTCCCCCCCCCCCCATTTTTTAAATCACTCCTTGTGG
CTGGTCCCAGAGTACAGTCGCACACCCTCCCTACCCCATGACAATGCAGCCACTTGGGAA
GAGTGGTTTTCCTAAAGAGACATTTCTGGAGTTGACTTCCTTATCCTAAAACTTTAAATA
AGAACTAAACACACACCAAAAAAACCCTCCAGAAACTCATAAGATGTGAACTCTAGGAAG
AAAAAAAGCACCCTTCTGACCACTTAGCAATAAGAGGGATCCATTCCCACCTCCCCTGAC
TACTCCTACCACCCTGTCCCCACCCCGTCAATGTGAGTAACAAACTACCCTGGCTACAGT
CAGTCACTGTAGGCTAGTGGACAATCCCTAGTGGAGGGTAGAGCCCCCTCATCAGGTGCA
TGAATGTTTGCGAGTGTCGGCTGCCACTGCCCCACACATTACGTCTTTATGGAACATCCC
CTGCCCACCACCCCAGTATTTCTACTTGGACACACCTAACTCAAAGGTTGGTGACTTGTG
GGCCATTCATCTACAACCAAGCCCTGATGGAACAAGAGACCCAAGCCTAGGGGATGCAAG
AACGACCCACTTCTTAAATGTTACCAGTCCCAGCCAACATTTTGGTGACATTATGGTTAA
TTTTCCCAACTGAAAATAAGCCAACACTCAAACTGGTTGTGTAAATGTTGCTAGACTTTA
TGTGTTGTACAACTAAACATTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGTTCTGTGTGTCTGCTGCCAGCTGCTGGTCTCCACACCCTCAACCGTTCTCAACCC
CTCCTCCCCCCGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTACCAGCCATC
CCCTGCCCCACTGCTGAATGAAGGCCATTCCAAGCGCCGCTCCTCCCTCCATTCCTCTCA
GCGTATTGCTGCAGGGCCACGCCCCTTTTAGTGCTGTGCGGGCCCCGCCCACCACCACGG
CCCCTCCCAGCCCTCTGCAGGTGGGAGGGGCCAGCTGCCTCTTTAGGACAGTTGCTTCCT
CCATTGATCCGAACCACCCTCCCCTCCCAGTGGAATGGAGCTCTAGAGAGCGCGAGCACT
GCCCTCCTCCATCGTCTGTGTCAGCCGGCCCTAGCCCATCTCTAGGGCAAAAGAACTCGC
CAAGAGCTTCTTCTGCCCTTGCAGACCCATACCAGCTACTTGTAACCAACCATCTTCAAG
GGAAATGGCCTTGCTCCCTGTCCATTCATCTGCATGAGCTACTCTTGGCTCCCTTAGAGG
GTCAAGAAAGCAACTTTTCTGCTTGTCAGATTTGTTGACGTCAGCTGTGTGAGCCCCAGT
GTGGGACTAGGGTGTCTCCTTCATTGCTTAAATCTTATTTATAAAGATAGGTCATTAGAG
ATGTGGGGGAGCAAGGGCTAGGATTCCCCCCCCCCCCATTTTTTAAATCACTCCTTGTGG
CTGGTCCCAGAGTACAGTCGCACACCCTCCCTACCCCATGACAATGCAGCCACTTGGGAA
GAGTGGTTTTCCTAAAGAGACATTTCTGGAGTTGACTTCCTTATCCTAAAACTTTAAATA
AGAACTAAACACACACCAAAAAAACCCTCCAGAAACTCATAAGATGTGAACTCTAGGAAG
AAAAAAAGCACCCTTCTGACCACTTAGCAATAAGAGGGATCCATTCCCACCTCCCCTGAC
TACTCCTACCACCCTGTCCCCACCCCGTCAATGTGAGTAACAAACTACCCTGGCTACAGT
CAGTCACTGTAGGCTAGTGGACAATCCCTAGTGGAGGGTAGAGCCCCCTCATCAGGTGCA
TGAATGTTTGCGAGTGTCGGCTGCCACTGCCCCACACATTACGTCTTTATGGAACATCCC
CTGCCCACCACCCCAGTATTTCTACTTGGACACACCTAACTCAAAGGTTGGTGACTTGTG
GGCCATTCATCTACAACCAAGCCCTGATGGAACAAGAGACCCAAGCCTAGGGGATGCAAG
AACGACCCACTTCTTAAATGTTACCAGTCCCAGCCAACATTTTGGTGACATTATGGTTAA
TTTTCCCAACTGAAAATAAGCCAACACTCAAACTGGTTGTGTAAATGTTGCTAGACTTTA
TGTGTTGTACAACTAAACATTGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               124-360, - strand, RNAz p=0.986843
               

               
               948-1101, - strand, RNAz p=0.930928

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-360, - strand, RNAz p=0.986843
               

               
               948-1101, - strand, RNAz p=0.930928

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               5-1177, gnl|bosTau2|chr5 (68451008-68452152)
               

               
               5-1177, gnl|Hg17|chr22 (40717342-40718503)
               

               
               5-1177, gnl|Mm7|chr15 (82377576-82378753)
               


               
               1199-1404, gnl|bosTau2|chr5 (68452152-68452355)
               

               
               1199-1404, gnl|canFam2|chr10 (26434706-26434241)
               

               
               1199-1404, gnl|dasNov1|scaffold_15793 (4606-4167)
               

               
               1199-1404, gnl|hg17|chr22 (40718251-40718721)
               

               
               1199-1404, gnl|Hg17|chr22 (40718503-40718712)
               

               
               1199-1404, gnl|mm7|chr15 (82378500-82378965)
               

               
               1199-1404, gnl|Mm7|chr15 (82378753-82378956)
               

               
               1199-1404, gnl|oryCun1|scaffold_181385 (72102-72553)
               

               
               1199-1404, gnl|panTro1|chr23 (40988257-40988727)
               

               
               1199-1404, gnl|rheMac2|chr10 (85961218-85961688)
               

               
               1199-1404, gnl|rn3|chr7 (120704469-120704925)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1177, gnl|bosTau2|chr5 (68451008-68452152)
               

               
               5-1177, gnl|Hg17|chr22 (40717342-40718503)
               

               
               5-1177, gnl|Mm7|chr15 (82377576-82378753)
               


               
               1199-1404, gnl|bosTau2|chr5 (68452152-68452355)
               

               
               1199-1404, gnl|canFam2|chr10 (26434706-26434241)
               

               
               1199-1404, gnl|dasNov1|scaffold_15793 (4606-4167)
               

               
               1199-1404, gnl|hg17|chr22 (40718251-40718721)
               

               
               1199-1404, gnl|Hg17|chr22 (40718503-40718712)
               

               
               1199-1404, gnl|mm7|chr15 (82378500-82378965)
               

               
               1199-1404, gnl|Mm7|chr15 (82378753-82378956)
               

               
               1199-1404, gnl|oryCun1|scaffold_181385 (72102-72553)
               

               
               1199-1404, gnl|panTro1|chr23 (40988257-40988727)
               

               
               1199-1404, gnl|rheMac2|chr10 (85961218-85961688)
               

               
               1199-1404, gnl|rn3|chr7 (120704469-120704925)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fce (1.08637)
               

               
               ecc (0.690211)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               ecc (0.690211)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               cbr (0.255951)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

	124-360, - strand, RNAz p=0.986843
	948-1101, - strand, RNAz p=0.930928

	5-1177, gnl\|bosTau2\|chr5 (68451008-68452152)
	5-1177, gnl\|Hg17\|chr22 (40717342-40718503)
	5-1177, gnl\|Mm7\|chr15 (82377576-82378753)

	1199-1404, gnl\|bosTau2\|chr5 (68452152-68452355)
	1199-1404, gnl\|canFam2\|chr10 (26434706-26434241)
	1199-1404, gnl\|dasNov1\|scaffold_15793 (4606-4167)
	1199-1404, gnl\|hg17\|chr22 (40718251-40718721)
	1199-1404, gnl\|Hg17\|chr22 (40718503-40718712)
	1199-1404, gnl\|mm7\|chr15 (82378500-82378965)
	1199-1404, gnl\|Mm7\|chr15 (82378753-82378956)
	1199-1404, gnl\|oryCun1\|scaffold_181385 (72102-72553)
	1199-1404, gnl\|panTro1\|chr23 (40988257-40988727)
	1199-1404, gnl\|rheMac2\|chr10 (85961218-85961688)
	1199-1404, gnl\|rn3\|chr7 (120704469-120704925)

	fce (1.08637)
	ecc (0.690211)
	fcc (0.593354)
	ebs (0.591506)
	cbr (0.255951)
	cbe (0.239234)
	ece (0.229305)
	fhi (0.169578)
	hyp (0.142837)