Ss1.1-recc2821c_f18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGACAGAGAAATAATGCACATGGATATTTTAAGGGTATAATGCAAGATGTGCAATTAC TTGTCATGCCCCAAGGATTTATTGCTCAGTGCCCAGATCTTAATCGCACCTGTCCAACTT GCAATGACTTCCATGGACTTGTGCAGAAAATCATGGAGCTGCAGGACATTTTAGCCAAAA CGTCAGCCAAGCTGTCTCGAGCTGAACAGCGAATGAATCGATTGGACCAGTGCTATTGTG AAAGGACTTGCACCACGAAGGGAATTACCTACCGAGAATTCGAGTCCTGGACAGACGGCT GTAAGAACTGCACATGCCTGAATGGAACCATCCAGTGTGAAACTCTGATTTGCCCGAATC CTGACTGCCCACTCAAGTCGGCTCTTGCATATGTGGATGGCAAGTGCTGTAAAGAATGCA ATCTGTATGCCAATTCCAAGGACAAACCTACTTTGAAGGAGAAAGAAATACAGTCTATTC CTCTTCCGGAGTGTGTGTTCTCTATGAATGCAAGGACCAGACCATGAAGCTGGTTGAGAG CTCTAGCTGTCCAGCTCTGGACTGTCCAGAGTCTCATCAGATTACCTTGTCTCACAGCTG TTGCAAAGTCTGTAAAGGTTATGACTTTTGTTCTGAAAGGCATAACTGCATGGAGAATTC TGTCTGCCGAAATCTGAATGACAGGGCTGTTTGTAGCTGTCGAGATGGCTTTAGAGCTCT TCGAGAAGACAATGCCTACTGTGAAGACGTTGATGAGTGTGCTGAAGGGCGCCATTACTG CCGTGAGAACACGATGTGTGTCAACACTCCGGGTTCCTTCATGTGCATCTGCAAAACTGG ATACATCAGAATTGATGACTATTCATGTACAGAACATGATGAGTGCATCACCAATCAGCA CAACTGTGATGAAAATGCCTTATGCTTCAATACTGTTGGGGGACACAACTGCGTTTGCAA GCCAGGCTATACTGGGAATGGAACTACATGCAAAGCATTCTGCAAAGATGGCTGTAGGAA TGGCGGAGCTTGTATTGCTGCTAATGTGTGTGCCTGCCCACAAGGCTTCACGGGGCCCAG CTGCGAAACAGATATTGATGAATGCTCTGACGGCTTTGTTCAGTGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGACAGAGAAATAATGCACATGGATATTTTAAGGGTATAATGCAAGATGTGCAATTAC TTGTCATGCCCCAAGGATTTATTGCTCAGTGCCCAGATCTTAATCGCACCTGTCCAACTT GCAATGACTTCCATGGACTTGTGCAGAAAATCATGGAGCTGCAGGACATTTTAGCCAAAA CGTCAGCCAAGCTGTCTCGAGCTGAACAGCGAATGAATCGATTGGACCAGTGCTATTGTG AAAGGACTTGCACCACGAAGGGAATTACCTACCGAGAATTCGAGTCCTGGACAGACGGCT GTAAGAACTGCACATGCCTGAATGGAACCATCCAGTGTGAAACTCTGATTTGCCCGAATC CTGACTGCCCACTCAAGTCGGCTCTTGCATATGTGGATGGCAAGTGCTGTAAAGAATGCA ATCTGTATGCCAATTCCAAGGACAAACCTACTTTGAAGGAGAAAGAAATACAGTCTATTC CTCTTCCGGAGTGTGTGTTCTCTATGAATGCAAGGACCAGACCATGAAGCTGGTTGAGAG CTCTAGCTGTCCAGCTCTGGACTGTCCAGAGTCTCATCAGATTACCTTGTCTCACAGCTG TTGCAAAGTCTGTAAAGGTTATGACTTTTGTTCTGAAAGGCATAACTGCATGGAGAATTC TGTCTGCCGAAATCTGAATGACAGGGCTGTTTGTAGCTGTCGAGATGGCTTTAGAGCTCT TCGAGAAGACAATGCCTACTGTGAAGACGTTGATGAGTGTGCTGAAGGGCGCCATTACTG CCGTGAGAACACGATGTGTGTCAACACTCCGGGTTCCTTCATGTGCATCTGCAAAACTGG ATACATCAGAATTGATGACTATTCATGTACAGAACATGATGAGTGCATCACCAATCAGCA CAACTGTGATGAAAATGCCTTATGCTTCAATACTGTTGGGGGACACAACTGCGTTTGCAA GCCAGGCTATACTGGGAATGGAACTACATGCAAAGCATTCTGCAAAGATGGCTGTAGGAA TGGCGGAGCTTGTATTGCTGCTAATGTGTGTGCCTGCCCACAAGGCTTCACGGGGCCCAG CTGCGAAACAGATATTGATGAATGCTCTGACGGCTTTGTTCAGTGTGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 628-746, - strand, RNAz p=0.785112 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 628-746, - strand, RNAz p=0.785112 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 616-746, gnl|bosTau2|chr17 (12665992-12666122) | |
| 616-746, gnl|canFam2|chr27 (12521971-12521821) | |
| 616-746, gnl|dasNov1|scaffold_11775 (1059-909) | |
| 616-746, gnl|echTel1|scaffold_309690 (87622-87473) | |
| 616-746, gnl|galGal2|chr1 (27334085-27334237) | |
| 616-746, gnl|hg17|chr12 (43383775-43383927) | |
| 616-746, gnl|Hg17|chr12 (43383906-43383776) | |
| 616-746, gnl|loxAfr1|scaffold_29101 (939-1090) | |
| 616-746, gnl|mm7|chr15 (95375795-95375940) | |
| 616-746, gnl|Mm7|chr15 (95375926-95375796) | |
| 616-746, gnl|monDom2|scaffold_31 (30648646-30648497) | |
| 616-746, gnl|oryCun1|scaffold_204314 (33968-34117) | |
| 616-746, gnl|panTro1|chr10 (43980984-43981136) | |
| 616-746, gnl|rheMac2|chr11 (41677355-41677507) | |
| 616-746, gnl|rn3|chr7 (133998944-133999089) | |
| 616-746, gnl|tetNig1|chr13 (9321566-9321426) | |
| 616-746, gnl|xenTro1|scaffold_66 (1881349-1881501) | |
| 863-995, gnl|bosTau2|chr25 (40987101-40987232) | |
| 863-995, gnl|canFam2|chr27 (12594839-12594692) | |
| 863-995, gnl|danRer3|chrNA (211355003-211354861) | |
| 863-995, gnl|dasNov1|scaffold_41338 (5754-5883) | |
| 863-995, gnl|echTel1|scaffold_296975 (3320-3192) | |
| 863-995, gnl|fr1|chrUn (65537135-65537264) | |
| 863-995, gnl|galGal2|chr1 (27299292-27299439) | |
| 863-995, gnl|hg17|chr12 (43290877-43291024) | |
| 863-995, gnl|Hg17|chr12 (43291029-43290898) | |
| 863-995, gnl|loxAfr1|scaffold_9421 (57318-57171) | |
| 863-995, gnl|mm7|chr15 (95299905-95300052) | |
| 863-995, gnl|Mm7|chr15 (95300057-95299926) | |
| 863-995, gnl|monDom2|scaffold_31 (30662872-30662742) | |
| 863-995, gnl|oryCun1|scaffold_104555 (4458-4604) | |
| 863-995, gnl|rheMac2|chr11 (41579519-41579666) | |
| 863-995, gnl|rn3|chr7 (133919060-133919209) | |
| 863-995, gnl|tetNig1|chr13 (9333857-9333726) | |
| 863-995, gnl|xenTro1|scaffold_66 (1867041-1867196) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 616-746, gnl|bosTau2|chr17 (12665992-12666122) | |
| 616-746, gnl|canFam2|chr27 (12521971-12521821) | |
| 616-746, gnl|dasNov1|scaffold_11775 (1059-909) | |
| 616-746, gnl|echTel1|scaffold_309690 (87622-87473) | |
| 616-746, gnl|galGal2|chr1 (27334085-27334237) | |
| 616-746, gnl|hg17|chr12 (43383775-43383927) | |
| 616-746, gnl|Hg17|chr12 (43383906-43383776) | |
| 616-746, gnl|loxAfr1|scaffold_29101 (939-1090) | |
| 616-746, gnl|mm7|chr15 (95375795-95375940) | |
| 616-746, gnl|Mm7|chr15 (95375926-95375796) | |
| 616-746, gnl|monDom2|scaffold_31 (30648646-30648497) | |
| 616-746, gnl|oryCun1|scaffold_204314 (33968-34117) | |
| 616-746, gnl|panTro1|chr10 (43980984-43981136) | |
| 616-746, gnl|rheMac2|chr11 (41677355-41677507) | |
| 616-746, gnl|rn3|chr7 (133998944-133999089) | |
| 616-746, gnl|tetNig1|chr13 (9321566-9321426) | |
| 616-746, gnl|xenTro1|scaffold_66 (1881349-1881501) | |
| 863-995, gnl|bosTau2|chr25 (40987101-40987232) | |
| 863-995, gnl|canFam2|chr27 (12594839-12594692) | |
| 863-995, gnl|danRer3|chrNA (211355003-211354861) | |
| 863-995, gnl|dasNov1|scaffold_41338 (5754-5883) | |
| 863-995, gnl|echTel1|scaffold_296975 (3320-3192) | |
| 863-995, gnl|fr1|chrUn (65537135-65537264) | |
| 863-995, gnl|galGal2|chr1 (27299292-27299439) | |
| 863-995, gnl|hg17|chr12 (43290877-43291024) | |
| 863-995, gnl|Hg17|chr12 (43291029-43290898) | |
| 863-995, gnl|loxAfr1|scaffold_9421 (57318-57171) | |
| 863-995, gnl|mm7|chr15 (95299905-95300052) | |
| 863-995, gnl|Mm7|chr15 (95300057-95299926) | |
| 863-995, gnl|monDom2|scaffold_31 (30662872-30662742) | |
| 863-995, gnl|oryCun1|scaffold_104555 (4458-4604) | |
| 863-995, gnl|rheMac2|chr11 (41579519-41579666) | |
| 863-995, gnl|rn3|chr7 (133919060-133919209) | |
| 863-995, gnl|tetNig1|chr13 (9333857-9333726) | |
| 863-995, gnl|xenTro1|scaffold_66 (1867041-1867196) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| mcp (0.170648) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| mcp (0.170648) | |
| eru (0.120048) | |
| ebs (0.118301) |