Ss1.1-recc2821c_f9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCGCGCGGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAA GGATCCGAGAGCTGGTCCCAGAGTCCCAGGCTTACATGGACCTCCTGGCGTTTGAGAGGA AACTGGATCAAACCATCATGCGGAAGCGGGTGGACATCCAGGAGGCTCTGAAGAGGCCAA TGAAGCAAAAGCGGAAGCTACGTCTTTATATCTCCAATACTTTTAACCCTGCGAAGCCTG ATGCAGAGGATTCGGATGGCAGCATAGCCTCCTGGGAGCTGCGGGTGGAGGGGAAGCTCC TGGATGACCCCAGCAAGCAGAAGCGGAAGTTCTCGTCCTTCTTCAAGAGTTTGGTCATTG AGCTGGACAAAGACCTCTATGGCCCTGACAACCACCTGGTGGAGTGGCACCGGACGCCCA CAACTCAGGAGAGGACGGGTTCCATGTGAATATGCCGGGGGACCTGAGCGTGCGCTGCAC GCTGCTCCTCATGCTGGACTACCAGCCCCCCCAGTTCAAACTGGATCCCCGCCTGGCCCG GCTGCTGGGGCTGCACACGCAGATCCGCTCATCCATTGTCCATGCCCTGTGGCAGTACGT GAAGACCAACAGGCTGCAGGACTCTCACGACAAGGAGTACATCAACGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCGCGCGGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAA GGATCCGAGAGCTGGTCCCAGAGTCCCAGGCTTACATGGACCTCCTGGCGTTTGAGAGGA AACTGGATCAAACCATCATGCGGAAGCGGGTGGACATCCAGGAGGCTCTGAAGAGGCCAA TGAAGCAAAAGCGGAAGCTACGTCTTTATATCTCCAATACTTTTAACCCTGCGAAGCCTG ATGCAGAGGATTCGGATGGCAGCATAGCCTCCTGGGAGCTGCGGGTGGAGGGGAAGCTCC TGGATGACCCCAGCAAGCAGAAGCGGAAGTTCTCGTCCTTCTTCAAGAGTTTGGTCATTG AGCTGGACAAAGACCTCTATGGCCCTGACAACCACCTGGTGGAGTGGCACCGGACGCCCA CAACTCAGGAGAGGACGGGTTCCATGTGAATATGCCGGGGGACCTGAGCGTGCGCTGCAC GCTGCTCCTCATGCTGGACTACCAGCCCCCCCAGTTCAAACTGGATCCCCGCCTGGCCCG GCTGCTGGGGCTGCACACGCAGATCCGCTCATCCATTGTCCATGCCCTGTGGCAGTACGT GAAGACCAACAGGCTGCAGGACTCTCACGACAAGGAGTACATCAACGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 62-183, + strand, RNAz p=0.928593 | |
| 62-183, - strand, RNAz p=0.928593 | |
| 62-183, + strand, RNAz p=0.99581 | |
| 62-183, - strand, RNAz p=0.99581 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 62-183, + strand, RNAz p=0.928593 | |
| 62-183, - strand, RNAz p=0.928593 | |
| 62-183, + strand, RNAz p=0.99581 | |
| 62-183, - strand, RNAz p=0.99581 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 62-183, gnl|bosTau2|chr19 (40510295-40510174) | |
| 62-183, gnl|canFam2|chr9 (14918028-14918200) | |
| 62-183, gnl|danRer3|chr7 (36065251-36065098) | |
| 62-183, gnl|dasNov1|scaffold_11277 (10865-11037) | |
| 62-183, gnl|echTel1|scaffold_313474 (45680-45512) | |
| 62-183, gnl|fr1|chrUn (38979225-38979053) | |
| 62-183, gnl|galGal2|chr27 (215144-215317) | |
| 62-183, gnl|hg17|chr17 (59268000-59268176) | |
| 62-183, gnl|Hg17|chr17 (59268137-59268016) | |
| 62-183, gnl|loxAfr1|scaffold_4277 (43627-43460) | |
| 62-183, gnl|mm7|chr11 (106375927-106376087) | |
| 62-183, gnl|Mm7|chr11 (106376055-106375934) | |
| 62-183, gnl|monDom2|scaffold_18 (35670254-35670070) | |
| 62-183, gnl|oryCun1|scaffold_215464 (55813-55979) | |
| 62-183, gnl|panTro1|chr19 (45867883-45867707) | |
| 62-183, gnl|rheMac2|chr16 (59350429-59350605) | |
| 62-183, gnl|rn3|chr10 (95674988-95675148) | |
| 62-183, gnl|tetNig1|chr2 (5649989-5649819) | |
| 62-183, gnl|xenTro1|scaffold_58 (614034-613858) | |
| 184-308, gnl|bosTau2|chr4 (64354561-64354685) | |
| 184-308, gnl|canFam2|chr16 (18230700-18230794) | |
| 184-308, gnl|danRer3|chr7 (36065696-36065610) | |
| 184-308, gnl|dasNov1|scaffold_42660 (5834-5929) | |
| 184-308, gnl|echTel1|scaffold_267036 (9821-9915) | |
| 184-308, gnl|fr1|chrUn (3404342-3404253) | |
| 184-308, gnl|galGal2|chr7 (22911717-22911801) | |
| 184-308, gnl|hg17|chr7 (150377201-150377295) | |
| 184-308, gnl|Hg17|chr7 (150377339-150377215) | |
| 184-308, gnl|loxAfr1|scaffold_19096 (30496-30590) | |
| 184-308, gnl|mm7|chr5 (23636202-23636296) | |
| 184-308, gnl|Mm7|chr5 (23636340-23636216) | |
| 184-308, gnl|monDom2|scaffold_7 (11458554-11458648) | |
| 184-308, gnl|oryCun1|scaffold_208276 (109008-109102) | |
| 184-308, gnl|panTro1|chr6_random (16547531-16547437) | |
| 184-308, gnl|rheMac2|chr3 (188191767-188191861) | |
| 184-308, gnl|rn3|chr4 (5956565-5956471) | |
| 184-308, gnl|tetNig1|chr6 (4853516-4853422) | |
| 184-308, gnl|xenTro1|scaffold_1115 (226657-226742) | |
| 502-646, gnl|bosTau2|chr19 (40508394-40508250) | |
| 502-646, gnl|canFam2|chr9 (14915690-14915866) | |
| 502-646, gnl|danRer3|chr7 (36071890-36071713) | |
| 502-646, gnl|dasNov1|scaffold_64051 (9045-8869) | |
| 502-646, gnl|echTel1|scaffold_313474 (47983-47807) | |
| 502-646, gnl|fr1|chrUn (38980751-38980575) | |
| 502-646, gnl|galGal2|chr27 (214052-214228) | |
| 502-646, gnl|hg17|chr17 (59265248-59265424) | |
| 502-646, gnl|Hg17|chr17 (59265424-59265280) | |
| 502-646, gnl|loxAfr1|scaffold_19096 (29469-29635) | |
| 502-646, gnl|mm7|chr11 (106374214-106374389) | |
| 502-646, gnl|Mm7|chr11 (106374390-106374245) | |
| 502-646, gnl|monDom2|scaffold_18 (35671465-35671292) | |
| 502-646, gnl|oryCun1|scaffold_215464 (54024-54200) | |
| 502-646, gnl|panTro1|chr19 (45870631-45870455) | |
| 502-646, gnl|rheMac2|chr16 (59347709-59347885) | |
| 502-646, gnl|rn3|chr10 (95673394-95673569) | |
| 502-646, gnl|tetNig1|chr2 (5651618-5651442) | |
| 502-646, gnl|xenTro1|scaffold_58 (615579-615408) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-183, gnl|bosTau2|chr19 (40510295-40510174) | |
| 62-183, gnl|canFam2|chr9 (14918028-14918200) | |
| 62-183, gnl|danRer3|chr7 (36065251-36065098) | |
| 62-183, gnl|dasNov1|scaffold_11277 (10865-11037) | |
| 62-183, gnl|echTel1|scaffold_313474 (45680-45512) | |
| 62-183, gnl|fr1|chrUn (38979225-38979053) | |
| 62-183, gnl|galGal2|chr27 (215144-215317) | |
| 62-183, gnl|hg17|chr17 (59268000-59268176) | |
| 62-183, gnl|Hg17|chr17 (59268137-59268016) | |
| 62-183, gnl|loxAfr1|scaffold_4277 (43627-43460) | |
| 62-183, gnl|mm7|chr11 (106375927-106376087) | |
| 62-183, gnl|Mm7|chr11 (106376055-106375934) | |
| 62-183, gnl|monDom2|scaffold_18 (35670254-35670070) | |
| 62-183, gnl|oryCun1|scaffold_215464 (55813-55979) | |
| 62-183, gnl|panTro1|chr19 (45867883-45867707) | |
| 62-183, gnl|rheMac2|chr16 (59350429-59350605) | |
| 62-183, gnl|rn3|chr10 (95674988-95675148) | |
| 62-183, gnl|tetNig1|chr2 (5649989-5649819) | |
| 62-183, gnl|xenTro1|scaffold_58 (614034-613858) | |
| 184-308, gnl|bosTau2|chr4 (64354561-64354685) | |
| 184-308, gnl|canFam2|chr16 (18230700-18230794) | |
| 184-308, gnl|danRer3|chr7 (36065696-36065610) | |
| 184-308, gnl|dasNov1|scaffold_42660 (5834-5929) | |
| 184-308, gnl|echTel1|scaffold_267036 (9821-9915) | |
| 184-308, gnl|fr1|chrUn (3404342-3404253) | |
| 184-308, gnl|galGal2|chr7 (22911717-22911801) | |
| 184-308, gnl|hg17|chr7 (150377201-150377295) | |
| 184-308, gnl|Hg17|chr7 (150377339-150377215) | |
| 184-308, gnl|loxAfr1|scaffold_19096 (30496-30590) | |
| 184-308, gnl|mm7|chr5 (23636202-23636296) | |
| 184-308, gnl|Mm7|chr5 (23636340-23636216) | |
| 184-308, gnl|monDom2|scaffold_7 (11458554-11458648) | |
| 184-308, gnl|oryCun1|scaffold_208276 (109008-109102) | |
| 184-308, gnl|panTro1|chr6_random (16547531-16547437) | |
| 184-308, gnl|rheMac2|chr3 (188191767-188191861) | |
| 184-308, gnl|rn3|chr4 (5956565-5956471) | |
| 184-308, gnl|tetNig1|chr6 (4853516-4853422) | |
| 184-308, gnl|xenTro1|scaffold_1115 (226657-226742) | |
| 502-646, gnl|bosTau2|chr19 (40508394-40508250) | |
| 502-646, gnl|canFam2|chr9 (14915690-14915866) | |
| 502-646, gnl|danRer3|chr7 (36071890-36071713) | |
| 502-646, gnl|dasNov1|scaffold_64051 (9045-8869) | |
| 502-646, gnl|echTel1|scaffold_313474 (47983-47807) | |
| 502-646, gnl|fr1|chrUn (38980751-38980575) | |
| 502-646, gnl|galGal2|chr27 (214052-214228) | |
| 502-646, gnl|hg17|chr17 (59265248-59265424) | |
| 502-646, gnl|Hg17|chr17 (59265424-59265280) | |
| 502-646, gnl|loxAfr1|scaffold_19096 (29469-29635) | |
| 502-646, gnl|mm7|chr11 (106374214-106374389) | |
| 502-646, gnl|Mm7|chr11 (106374390-106374245) | |
| 502-646, gnl|monDom2|scaffold_18 (35671465-35671292) | |
| 502-646, gnl|oryCun1|scaffold_215464 (54024-54200) | |
| 502-646, gnl|panTro1|chr19 (45870631-45870455) | |
| 502-646, gnl|rheMac2|chr16 (59347709-59347885) | |
| 502-646, gnl|rn3|chr10 (95673394-95673569) | |
| 502-646, gnl|tetNig1|chr2 (5651618-5651442) | |
| 502-646, gnl|xenTro1|scaffold_58 (615579-615408) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| med (0.116252) |