Non-Coding RNA Search

Ss1.1-recc2821c_m9.5

Sequence:


               
               GAGATTCAGGTCGGATATTCATGACCCTTTCAAACATTCCCGAAACTCTCGTAGGGTCAG
CATTTATGGACATTTCCTTTGGGAAGAAAGAGGAGGAGCGGCTAAAAGCGGAGTCTGTCT
CAAAAAGCACTGAACGGAGGAAGAGGCAACAGAGCCCCCGTTGGTATTCTTAGGACCCTG
CATTATTCCCAGAAGGAGAGGAAATGAGCACATTCAAGGAGGCAGTGACCTTCAAGGATG
TGGCTGTGGCCTTCACTGAGGAGGAGCTTGGGCTGCTGGACTCTGCCCAGAGGAAGCTGT
ACCAGGAAGTGATGGTAGAAAACTTCAGGAACCTGGTCTCCGTGGGAGAAAACAGTCAAA
ATCAAAGTGAGTTGAGGGCCATTCAAGACAGAGGATCCCATGAAGAGCTTTCCTGTAGGC
AAATCTGGCAACAGATTGCAGATGACTTAACCAGATGTCAAGACTCCATGATAAATAGTG
GTCAGTTCCACAAACTAACAGGTGATTCCCCCTGCCAGGTTGGGGCAGGATTATCTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTCAGGTCGGATATTCATGACCCTTTCAAACATTCCCGAAACTCTCGTAGGGTCAG
CATTTATGGACATTTCCTTTGGGAAGAAAGAGGAGGAGCGGCTAAAAGCGGAGTCTGTCT
CAAAAAGCACTGAACGGAGGAAGAGGCAACAGAGCCCCCGTTGGTATTCTTAGGACCCTG
CATTATTCCCAGAAGGAGAGGAAATGAGCACATTCAAGGAGGCAGTGACCTTCAAGGATG
TGGCTGTGGCCTTCACTGAGGAGGAGCTTGGGCTGCTGGACTCTGCCCAGAGGAAGCTGT
ACCAGGAAGTGATGGTAGAAAACTTCAGGAACCTGGTCTCCGTGGGAGAAAACAGTCAAA
ATCAAAGTGAGTTGAGGGCCATTCAAGACAGAGGATCCCATGAAGAGCTTTCCTGTAGGC
AAATCTGGCAACAGATTGCAGATGACTTAACCAGATGTCAAGACTCCATGATAAATAGTG
GTCAGTTCCACAAACTAACAGGTGATTCCCCCTGCCAGGTTGGGGCAGGATTATCTATTC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               217-349, gnl|bosTau2|chr14 (25888961-25889093)
               

               
               217-349, gnl|Hg17|chr19 (49424437-49424569)
               

               
               217-349, gnl|Mm7|chr7 (21096871-21096739)
               


               
               360-540, gnl|bosTau2|chr14 (25875730-25875907)
               

               
               360-540, gnl|Hg17|chr19 (49371499-49371676)
               

               
               360-540, gnl|Mm7|chr7 (21080168-21079997)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-349, gnl|bosTau2|chr14 (25888961-25889093)
               

               
               217-349, gnl|Hg17|chr19 (49424437-49424569)
               

               
               217-349, gnl|Mm7|chr7 (21096871-21096739)
               


               
               360-540, gnl|bosTau2|chr14 (25875730-25875907)
               

               
               360-540, gnl|Hg17|chr19 (49371499-49371676)
               

               
               360-540, gnl|Mm7|chr7 (21080168-21079997)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	217-349, gnl\|bosTau2\|chr14 (25888961-25889093)
	217-349, gnl\|Hg17\|chr19 (49424437-49424569)
	217-349, gnl\|Mm7\|chr7 (21096871-21096739)

	360-540, gnl\|bosTau2\|chr14 (25875730-25875907)
	360-540, gnl\|Hg17\|chr19 (49371499-49371676)
	360-540, gnl\|Mm7\|chr7 (21080168-21079997)