Non-Coding RNA Search

Ss1.1-recc2821c_n3.5

Sequence:


               
               GTTTTGGTGGGCTCAGAAAACAGTGGAGGTTTTCTAGGCTCAGTATCAATAGAGAGAACA
GGCTTCCAGATATCAGAGGCCACTTTAGGGGACTCAGATGGCCCAGAAGGACCTGGTTTC
CGGGTCTCAGGGAAGACAGGTTTCTGAGGTTCAATAAAAAAGGAAGACTTCCAGAGATCA
GGGGAACCACCACGGGAACTTTTCTGGGACTCAGGAAAATCAAGTGAAGCAGGAGACGTT
TTCCGTTGATCAGGAGAAAGCTTCCAAAGCTCTGGAGACCCTGAGGGCTTTCTGAGCTCT
GGAGATCCTGCTGGGCTACGGATCTCTGGGGACAACGGTGGGCCTGGCTTGCGAAGCTCA
GGAGACAAAGGAGGTCCTGCCTTTCGGAGCTCAGGAGACACTGGGGGAACCGCCTTCCAA
TGTTCAGGTGATAAGGTGGGAGTTGTCTTTCGGAGTTCTGGTGGGCCAGACTTCCACAAC
TCAGGAGACGCGGGGGGAGATTTCCAGGAACCGGGTGAAACTGATGAAGACTTCCAGGAT
GCAGGGGACACAGATGGAGCCGGTTTCCAAGGTCCAGGTGATATAGAAGGGATTGGCTTC
CAGGGACCAGGAGACACAGATGGAGCAGGTTTAGCAGGCTTCCAAGGCCCTGACGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGGTGGGCTCAGAAAACAGTGGAGGTTTTCTAGGCTCAGTATCAATAGAGAGAACA
GGCTTCCAGATATCAGAGGCCACTTTAGGGGACTCAGATGGCCCAGAAGGACCTGGTTTC
CGGGTCTCAGGGAAGACAGGTTTCTGAGGTTCAATAAAAAAGGAAGACTTCCAGAGATCA
GGGGAACCACCACGGGAACTTTTCTGGGACTCAGGAAAATCAAGTGAAGCAGGAGACGTT
TTCCGTTGATCAGGAGAAAGCTTCCAAAGCTCTGGAGACCCTGAGGGCTTTCTGAGCTCT
GGAGATCCTGCTGGGCTACGGATCTCTGGGGACAACGGTGGGCCTGGCTTGCGAAGCTCA
GGAGACAAAGGAGGTCCTGCCTTTCGGAGCTCAGGAGACACTGGGGGAACCGCCTTCCAA
TGTTCAGGTGATAAGGTGGGAGTTGTCTTTCGGAGTTCTGGTGGGCCAGACTTCCACAAC
TCAGGAGACGCGGGGGGAGATTTCCAGGAACCGGGTGAAACTGATGAAGACTTCCAGGAT
GCAGGGGACACAGATGGAGCCGGTTTCCAAGGTCCAGGTGATATAGAAGGGATTGGCTTC
CAGGGACCAGGAGACACAGATGGAGCAGGTTTAGCAGGCTTCCAAGGCCCTGACGATGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-356, + strand, RNAz p=0.908812

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-356, + strand, RNAz p=0.908812

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-566, gnl|bosTau2|chr12 (47788601-47789166)
               

               
               1-566, gnl|Hg17|chr13 (114109029-114108431)
               

               
               1-566, gnl|Mm7|chr8 (13853643-13853045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr12 (47788601-47789166)
               

               
               1-566, gnl|Hg17|chr13 (114109029-114108431)
               

               
               1-566, gnl|Mm7|chr8 (13853643-13853045)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-566, gnl\|bosTau2\|chr12 (47788601-47789166)
	1-566, gnl\|Hg17\|chr13 (114109029-114108431)
	1-566, gnl\|Mm7\|chr8 (13853643-13853045)