Non-Coding RNA Search

Ss1.1-recc2821c_o9.5

Sequence:


               
               GTCAAGGCCGCATCTCAGGTCCTAAACAGCATGTGGCAGTACCGAGATCTGAGGAGTCTC
TACAAAAAGGATGGATGGTCCCAGTATCACTTCGTAGCCTCATCTTCAACCATTGAGAGG
GATCGGCAAAGACCCTACTCCTCCTCCCGCACGCCCTCCATCTCCCCCGTGCGTGTGTCT
CCCAACAATCGCTCAGCAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAA
AGGAAAACAGACTACGAGTCCACTGGCAGCAATGCCACCTATCATGGAACTAAAGGAGAA
CACACGTCCAGAAAGGACACCATGACAGCTCAAAACACTGGAATTTCAACTTTGTATAGG
AATTCATATGGTGCGCCTGCTGAAGACATCAAACATAACCAGGTTTCAGCACAGCCAGTC
CCACAGGAGCCCAGCAGAAAAGACTACGAAACCTACCAGCCGTTTCCCAATTCCACGAGA
AACTACGAAGAGTCCTTCTTCGAGGACCAGGTCCACCACCGCCCTCCCGCCAGCGAGTAT
ACCATGCACCTGGGACTCAAGTCCACCGGCAATTACGTCGACTTCTACTCCGCTGCCCGA
CCCTACAGTGAATTGAACTATGAAACGAGCCACTACCCGGCCTCCCCCGACTCCTGGGTG
TGAGGCAGGCGGCACGTGGCACCAGGAACAGTGCATGTGCATGCAGACCCACGACATTGC
TTTTTTTTCCCCCCCTGCAAATTTAGTTTGTCAAAGCCTGTTCCATAGGAAGGCTGTGAT
AACCAGTAAGGAAACCTTACAAGCTATCTTAGAAGGCTAAATGAATCGAGAGTTAACTTG
AAAGTCCATAGAAAGTGATCCTAAATCTGACATTGAGTGACACCTTTCTAGGTCGGGCTG
AAAAGTCTAAAAAAGTGCTTTCCACTGAAGGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAAGGCCGCATCTCAGGTCCTAAACAGCATGTGGCAGTACCGAGATCTGAGGAGTCTC
TACAAAAAGGATGGATGGTCCCAGTATCACTTCGTAGCCTCATCTTCAACCATTGAGAGG
GATCGGCAAAGACCCTACTCCTCCTCCCGCACGCCCTCCATCTCCCCCGTGCGTGTGTCT
CCCAACAATCGCTCAGCAAGTGCCCCAGCTTCACCTCGGGAAATGATCAGCCTCAAAGAA
AGGAAAACAGACTACGAGTCCACTGGCAGCAATGCCACCTATCATGGAACTAAAGGAGAA
CACACGTCCAGAAAGGACACCATGACAGCTCAAAACACTGGAATTTCAACTTTGTATAGG
AATTCATATGGTGCGCCTGCTGAAGACATCAAACATAACCAGGTTTCAGCACAGCCAGTC
CCACAGGAGCCCAGCAGAAAAGACTACGAAACCTACCAGCCGTTTCCCAATTCCACGAGA
AACTACGAAGAGTCCTTCTTCGAGGACCAGGTCCACCACCGCCCTCCCGCCAGCGAGTAT
ACCATGCACCTGGGACTCAAGTCCACCGGCAATTACGTCGACTTCTACTCCGCTGCCCGA
CCCTACAGTGAATTGAACTATGAAACGAGCCACTACCCGGCCTCCCCCGACTCCTGGGTG
TGAGGCAGGCGGCACGTGGCACCAGGAACAGTGCATGTGCATGCAGACCCACGACATTGC
TTTTTTTTCCCCCCCTGCAAATTTAGTTTGTCAAAGCCTGTTCCATAGGAAGGCTGTGAT
AACCAGTAAGGAAACCTTACAAGCTATCTTAGAAGGCTAAATGAATCGAGAGTTAACTTG
AAAGTCCATAGAAAGTGATCCTAAATCTGACATTGAGTGACACCTTTCTAGGTCGGGCTG
AAAAGTCTAAAAAAGTGCTTTCCACTGAAGGTGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820859|ref|XP_601963.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820859|ref|XP_601963.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               98-196, - strand, RNAz p=0.537896
               

               
               724-839, - strand, RNAz p=0.603494

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-196, - strand, RNAz p=0.537896
               

               
               724-839, - strand, RNAz p=0.603494

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               68-196, gnl|bosTau2|chr20 (35923850-35923978)
               

               
               68-196, gnl|canFam2|chr34 (6426321-6426165)
               

               
               68-196, gnl|danRer3|chr24 (19385294-19385433)
               

               
               68-196, gnl|fr1|chrUn (115858283-115858141)
               

               
               68-196, gnl|galGal2|chr2 (77889929-77889770)
               

               
               68-196, gnl|hg17|chr5 (11045640-11045800)
               

               
               68-196, gnl|Hg17|chr5 (11045791-11045663)
               

               
               68-196, gnl|loxAfr1|scaffold_82738 (5676-5831)
               

               
               68-196, gnl|mm7|chr15 (31114343-31114194)
               

               
               68-196, gnl|Mm7|chr15 (31114201-31114329)
               

               
               68-196, gnl|monDom2|scaffold_4 (31116087-31116251)
               

               
               68-196, gnl|panTro1|chr4_random (7695611-7695771)
               

               
               68-196, gnl|rheMac2|chr6 (10929294-10929453)
               

               
               68-196, gnl|rn3|chr2 (83016152-83016003)
               

               
               68-196, gnl|tetNig1|chrUn_random (16126776-16126918)
               

               
               68-196, gnl|xenTro1|scaffold_605 (230810-230950)
               


               
               400-935, gnl|bosTau2|chr20 (35940397-35940921)
               

               
               400-935, gnl|Hg17|chr5 (11026828-11026278)
               

               
               400-935, gnl|Mm7|chr15 (31134819-31135398)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-196, gnl|bosTau2|chr20 (35923850-35923978)
               

               
               68-196, gnl|canFam2|chr34 (6426321-6426165)
               

               
               68-196, gnl|danRer3|chr24 (19385294-19385433)
               

               
               68-196, gnl|fr1|chrUn (115858283-115858141)
               

               
               68-196, gnl|galGal2|chr2 (77889929-77889770)
               

               
               68-196, gnl|hg17|chr5 (11045640-11045800)
               

               
               68-196, gnl|Hg17|chr5 (11045791-11045663)
               

               
               68-196, gnl|loxAfr1|scaffold_82738 (5676-5831)
               

               
               68-196, gnl|mm7|chr15 (31114343-31114194)
               

               
               68-196, gnl|Mm7|chr15 (31114201-31114329)
               

               
               68-196, gnl|monDom2|scaffold_4 (31116087-31116251)
               

               
               68-196, gnl|panTro1|chr4_random (7695611-7695771)
               

               
               68-196, gnl|rheMac2|chr6 (10929294-10929453)
               

               
               68-196, gnl|rn3|chr2 (83016152-83016003)
               

               
               68-196, gnl|tetNig1|chrUn_random (16126776-16126918)
               

               
               68-196, gnl|xenTro1|scaffold_605 (230810-230950)
               


               
               400-935, gnl|bosTau2|chr20 (35940397-35940921)
               

               
               400-935, gnl|Hg17|chr5 (11026828-11026278)
               

               
               400-935, gnl|Mm7|chr15 (31134819-31135398)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.10408)

	98-196, - strand, RNAz p=0.537896
	724-839, - strand, RNAz p=0.603494

	68-196, gnl\|bosTau2\|chr20 (35923850-35923978)
	68-196, gnl\|canFam2\|chr34 (6426321-6426165)
	68-196, gnl\|danRer3\|chr24 (19385294-19385433)
	68-196, gnl\|fr1\|chrUn (115858283-115858141)
	68-196, gnl\|galGal2\|chr2 (77889929-77889770)
	68-196, gnl\|hg17\|chr5 (11045640-11045800)
	68-196, gnl\|Hg17\|chr5 (11045791-11045663)
	68-196, gnl\|loxAfr1\|scaffold_82738 (5676-5831)
	68-196, gnl\|mm7\|chr15 (31114343-31114194)
	68-196, gnl\|Mm7\|chr15 (31114201-31114329)
	68-196, gnl\|monDom2\|scaffold_4 (31116087-31116251)
	68-196, gnl\|panTro1\|chr4_random (7695611-7695771)
	68-196, gnl\|rheMac2\|chr6 (10929294-10929453)
	68-196, gnl\|rn3\|chr2 (83016152-83016003)
	68-196, gnl\|tetNig1\|chrUn_random (16126776-16126918)
	68-196, gnl\|xenTro1\|scaffold_605 (230810-230950)

	400-935, gnl\|bosTau2\|chr20 (35940397-35940921)
	400-935, gnl\|Hg17\|chr5 (11026828-11026278)
	400-935, gnl\|Mm7\|chr15 (31134819-31135398)