Non-Coding RNA Search

Ss1.1-recc2822c_c15.5

Sequence:


               
               CCCAAATGATAGACTGATGTATTCATGGGTGGGACATTTATTTTAGCCACGAATAATTGA
ACCAGCGGTTTACAATTGAAACTTCTCTGTGCTGGTGATTTTACGTGGCGGCCCTCTGCT
GCAGTTCTAAAACTTGTTGAAAACACACACCCATTTATAAGACTGAGTCTATGTATTTTG
AAAATCTGAAAACGTTGCATGTATTTTATGTTTCAATCATAGATGAATCGGACATTTTCT
GTGGTGAGGTAGAAACTTTAAGTGAATTAGTAACGTGTAATAATTGGGCTTCAGAATGGA
AATAGTCTTGACGAAAATTTTAAAAAGCTGTGTAGCCTAAGTTCTTGATAGTAAAAGAAG
AGAAAAATAGATGATCGGCGATCTAAAAATGAAAACCTGTTAGAACTCAGGACAGGCGCT
TGAATGCGCTTTTAACAATATTTAAGGCTGTTTTGATGAATGCATTGTGAAAATCATTCT
TAATGAATTCTTTATGAATGTCTAAAACATAATATAATACACAAGGTATTCTTGCCACTG
GATAGTCTTCAATAAAAGTTTAATTGCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAATGATAGACTGATGTATTCATGGGTGGGACATTTATTTTAGCCACGAATAATTGA
ACCAGCGGTTTACAATTGAAACTTCTCTGTGCTGGTGATTTTACGTGGCGGCCCTCTGCT
GCAGTTCTAAAACTTGTTGAAAACACACACCCATTTATAAGACTGAGTCTATGTATTTTG
AAAATCTGAAAACGTTGCATGTATTTTATGTTTCAATCATAGATGAATCGGACATTTTCT
GTGGTGAGGTAGAAACTTTAAGTGAATTAGTAACGTGTAATAATTGGGCTTCAGAATGGA
AATAGTCTTGACGAAAATTTTAAAAAGCTGTGTAGCCTAAGTTCTTGATAGTAAAAGAAG
AGAAAAATAGATGATCGGCGATCTAAAAATGAAAACCTGTTAGAACTCAGGACAGGCGCT
TGAATGCGCTTTTAACAATATTTAAGGCTGTTTTGATGAATGCATTGTGAAAATCATTCT
TAATGAATTCTTTATGAATGTCTAAAACATAATATAATACACAAGGTATTCTTGCCACTG
GATAGTCTTCAATAAAAGTTTAATTGCAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-568, gnl|bosTau2|chr11 (71465692-71465114)
               

               
               1-568, gnl|Hg17|chr2 (5788445-5789008)
               

               
               1-568, gnl|Mm7|chr12 (25174560-25174038)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-568, gnl|bosTau2|chr11 (71465692-71465114)
               

               
               1-568, gnl|Hg17|chr2 (5788445-5789008)
               

               
               1-568, gnl|Mm7|chr12 (25174560-25174038)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eye (0.511509)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)

	1-568, gnl\|bosTau2\|chr11 (71465692-71465114)
	1-568, gnl\|Hg17\|chr2 (5788445-5789008)
	1-568, gnl\|Mm7\|chr12 (25174560-25174038)

	eye (0.511509)
	ecc (0.345105)
	fce (0.271592)
	ece (0.229305)
	ebs (0.118301)