Non-Coding RNA Search

Ss1.1-recc2822c_e14.5

Sequence:


               
               AGCAGAAGTACAGTAGACTTAGAAACTCTTGTGTTTATCTGGTTGAAGTTCTTTAATTTC
TCTCCTAGAGAAATTTTCAAAGGGCATTTCATTTCAGTCCTTCATATTGTGGTTTCTCCC
ATCATTTAATGTCACTTAACTTTTTCTGCCCAGTAATGTTGATGCAGTTTGCATAAGAAG
CCTTAGAAGTAAAGAGGCAGCAGAGAAAGCCAAGTATTAAAATATTTGGCCTTGATTTAG
TTTATCCAATTATCTGGTAAGGACATGGATATTAGTAAAAAGATGATATACAAGACCTAA
AAATTTAATGAACATCATTTTTTGCTCTAAGTTGTTTATGTTGAATAATTTTATCCTAAG
TAGGAGATGCTTGTATTTAACATAACCATGCTTTCTATAAAATCAAATATGTATTTGTTG
GAATATTGGTAAAAATAATTTTATCTGTCTCCATTGTGGAGGGGGGAAAAAATCCAATTT
TTATTGTATATACATTAGAAAGTTGTACTGTGCATTTACATTTTTGAAAATGTGAAAATG
ACATATATATTATTTTGAAATGATTGTATGACCACTTCTTAAACTTATGACTAACTATAT
ATGTAGCAGCACACCCATAAGAAACCAGACCAAAACTGAATGCATATTATCACTGTGACC
TTGAACTTACAGTCATTTGGGATAAAACAGACTGTGCCTTAAAATGATGAAGAGATGCCC
TGCAGTTTTATAACTGTATATTTTATTATGGGTGGTCTTCTCAAATTGGCCCCAAGTCCT
TTTAGTTGAGGTCAATGAAGTAAAAGTTTAAAATAAAAGTTGATTGATATTTCCCTTAGT
GTTTGCTGAACTGTTGCTCTAGAGTCTTCCCTTAATTTCAGAGTTCCTATTTCAAATTAA
AATTGACTTACACTTCATAGATGTAGAAAATTAAATTTGGCTTAAGTTTCTGCAAATAAA
TTTATTTTAGTAGACAATTGTACTTCTGAACTTATTGCACATGGGAAAATCTTAAATATA
ATTTTTGTCTTTAATGAGTAATCTTTCAAAGACAGGAATTTTTCCCTAAAACCTGTACTT
TTTCCCTCAAATTACTGAGGCATGTATTTGTGTATCAAATAAAGTTAGGTTAGCCAATAA
TGATTTTTCAGTAGTTAAATACAAACTCAAATTCAGCTTTTTATTTTTAAGCATTATTTT
CCCTTTTACTTTTTCCTTCCTAATTATTTTTAAGGTATCAAGAAAGAACTGGCTCCAGTT
TTGGGTGGGGTTTTTCTAATATAAAGACTTGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGAAGTACAGTAGACTTAGAAACTCTTGTGTTTATCTGGTTGAAGTTCTTTAATTTC
TCTCCTAGAGAAATTTTCAAAGGGCATTTCATTTCAGTCCTTCATATTGTGGTTTCTCCC
ATCATTTAATGTCACTTAACTTTTTCTGCCCAGTAATGTTGATGCAGTTTGCATAAGAAG
CCTTAGAAGTAAAGAGGCAGCAGAGAAAGCCAAGTATTAAAATATTTGGCCTTGATTTAG
TTTATCCAATTATCTGGTAAGGACATGGATATTAGTAAAAAGATGATATACAAGACCTAA
AAATTTAATGAACATCATTTTTTGCTCTAAGTTGTTTATGTTGAATAATTTTATCCTAAG
TAGGAGATGCTTGTATTTAACATAACCATGCTTTCTATAAAATCAAATATGTATTTGTTG
GAATATTGGTAAAAATAATTTTATCTGTCTCCATTGTGGAGGGGGGAAAAAATCCAATTT
TTATTGTATATACATTAGAAAGTTGTACTGTGCATTTACATTTTTGAAAATGTGAAAATG
ACATATATATTATTTTGAAATGATTGTATGACCACTTCTTAAACTTATGACTAACTATAT
ATGTAGCAGCACACCCATAAGAAACCAGACCAAAACTGAATGCATATTATCACTGTGACC
TTGAACTTACAGTCATTTGGGATAAAACAGACTGTGCCTTAAAATGATGAAGAGATGCCC
TGCAGTTTTATAACTGTATATTTTATTATGGGTGGTCTTCTCAAATTGGCCCCAAGTCCT
TTTAGTTGAGGTCAATGAAGTAAAAGTTTAAAATAAAAGTTGATTGATATTTCCCTTAGT
GTTTGCTGAACTGTTGCTCTAGAGTCTTCCCTTAATTTCAGAGTTCCTATTTCAAATTAA
AATTGACTTACACTTCATAGATGTAGAAAATTAAATTTGGCTTAAGTTTCTGCAAATAAA
TTTATTTTAGTAGACAATTGTACTTCTGAACTTATTGCACATGGGAAAATCTTAAATATA
ATTTTTGTCTTTAATGAGTAATCTTTCAAAGACAGGAATTTTTCCCTAAAACCTGTACTT
TTTCCCTCAAATTACTGAGGCATGTATTTGTGTATCAAATAAAGTTAGGTTAGCCAATAA
TGATTTTTCAGTAGTTAAATACAAACTCAAATTCAGCTTTTTATTTTTAAGCATTATTTT
CCCTTTTACTTTTTCCTTCCTAATTATTTTTAAGGTATCAAGAAAGAACTGGCTCCAGTT
TTGGGTGGGGTTTTTCTAATATAAAGACTTGCATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1296, gnl|bosTau2|chr2 (53636118-53634854)
               

               
               1-1296, gnl|Hg17|chr2 (197525378-197524093)
               

               
               1-1296, gnl|Mm7|chr1 (54707747-54706534)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1296, gnl|bosTau2|chr2 (53636118-53634854)
               

               
               1-1296, gnl|Hg17|chr2 (197525378-197524093)
               

               
               1-1296, gnl|Mm7|chr1 (54707747-54706534)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-1296, gnl\|bosTau2\|chr2 (53636118-53634854)
	1-1296, gnl\|Hg17\|chr2 (197525378-197524093)
	1-1296, gnl\|Mm7\|chr1 (54707747-54706534)

	lin (0.291206)
	kid (0.259471)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)