Ss1.1-recc2822c_g1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCACGTGGAGTATGAGAAGACAAACCGCGCGCGCAAGCATCGCCCGTGCCTGTACGACC CATCGCAGGTGTGCTTCACCGAGCATACGCAGAGCCAGGCCGCCTGGCTCTGTGCCAAGC CCTTCAAAGTCATCTGTATTTTCGTCTCCTTCCTCAGCTTTGACTACAAACTGGTGCAGA AGGTGTGCCCAGACTATAACTTCCAGAGCGAGCACCCTTACTTTGGATAGCGCGCCCCGC CCTCGCCAGGGTCTTGAACTTCCCGCGAAATCCCGGACTCCCTAAGTGGGACCCTTCCCA GTGCCCCGCAGCTCCTGTGGCCGCGTCCACCCCTTCCACTCTGGGACGGAGAGGAACAGC CCTCCTGGGGACTATCAGCCGGTATGGGTCCCCTTTTCCTCAAGGGGAGTGCCCACAGGG CTGGGTATAGCCCATGCCTACAGCCTGAAGTGGAGGAGCAAGAGCGCAGCCCTAGAATAG GCGGGGCTTGGAGGCGGTCCCAGCGTCCGCAATAGGTTCCTTACTACGCCCCTGGCGCTG GGCTGGATACTCCCTTTGCCCGCGGCTTTAATAACGCCTGGCCTGGCATCCTCATCCCAT ACTGACTTCCTTATCCGCAGACGCTTGTCCTCCACCCTGTGCCCACGTAAAGACCGTAAA GGTCTAGAAACCTCGGGCTGTTCTATCCCCTTCTGCCTGCCATATGCCTGGCCCCCTTTC CCGCAAACCTCAGTAAGTAGAGCAGCGGATGCAGAACTCCTGGGCATAGACTAGGGCCCC AGCCCTCTGCCCACCTCTCTCTGGTCCCTGCTGTCCTGCTCCACCTTTCTGGCTGCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCACGTGGAGTATGAGAAGACAAACCGCGCGCGCAAGCATCGCCCGTGCCTGTACGACC CATCGCAGGTGTGCTTCACCGAGCATACGCAGAGCCAGGCCGCCTGGCTCTGTGCCAAGC CCTTCAAAGTCATCTGTATTTTCGTCTCCTTCCTCAGCTTTGACTACAAACTGGTGCAGA AGGTGTGCCCAGACTATAACTTCCAGAGCGAGCACCCTTACTTTGGATAGCGCGCCCCGC CCTCGCCAGGGTCTTGAACTTCCCGCGAAATCCCGGACTCCCTAAGTGGGACCCTTCCCA GTGCCCCGCAGCTCCTGTGGCCGCGTCCACCCCTTCCACTCTGGGACGGAGAGGAACAGC CCTCCTGGGGACTATCAGCCGGTATGGGTCCCCTTTTCCTCAAGGGGAGTGCCCACAGGG CTGGGTATAGCCCATGCCTACAGCCTGAAGTGGAGGAGCAAGAGCGCAGCCCTAGAATAG GCGGGGCTTGGAGGCGGTCCCAGCGTCCGCAATAGGTTCCTTACTACGCCCCTGGCGCTG GGCTGGATACTCCCTTTGCCCGCGGCTTTAATAACGCCTGGCCTGGCATCCTCATCCCAT ACTGACTTCCTTATCCGCAGACGCTTGTCCTCCACCCTGTGCCCACGTAAAGACCGTAAA GGTCTAGAAACCTCGGGCTGTTCTATCCCCTTCTGCCTGCCATATGCCTGGCCCCCTTTC CCGCAAACCTCAGTAAGTAGAGCAGCGGATGCAGAACTCCTGGGCATAGACTAGGGCCCC AGCCCTCTGCCCACCTCTCTCTGGTCCCTGCTGTCCTGCTCCACCTTTCTGGCTGCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-199, - strand, RNAz p=0.955963 | |
| 316-428, - strand, RNAz p=0.843739 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-199, - strand, RNAz p=0.955963 | |
| 316-428, - strand, RNAz p=0.843739 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-840, gnl|bosTau2|chr5 (32463527-32462672) | |
| 1-840, gnl|Hg17|chr12 (55905568-55906431) | |
| 1-840, gnl|Mm7|chr10 (127027724-127026942) | |
| 7-222, gnl|bosTau2|chr19 (29805251-29805036) | |
| 7-222, gnl|canFam2|chr9 (28993281-28993592) | |
| 7-222, gnl|danRer3|chr9 (12732838-12732527) | |
| 7-222, gnl|dasNov1|scaffold_8300 (89389-89700) | |
| 7-222, gnl|echTel1|scaffold_90387 (1053-1364) | |
| 7-222, gnl|fr1|chrUn (38917307-38916996) | |
| 7-222, gnl|galGal2|chr7 (32104974-32104663) | |
| 7-222, gnl|hg17|chr17 (45011305-45011616) | |
| 7-222, gnl|Hg17|chr17 (45011432-45011647) | |
| 7-222, gnl|loxAfr1|scaffold_14391 (26008-26319) | |
| 7-222, gnl|mm7|chr11 (95620225-95619914) | |
| 7-222, gnl|Mm7|chr11 (95620096-95619881) | |
| 7-222, gnl|monDom2|scaffold_18 (44133371-44133060) | |
| 7-222, gnl|oryCun1|scaffold_184745 (7268-7579) | |
| 7-222, gnl|panTro1|chr19_random (30617064-30617374) | |
| 7-222, gnl|rheMac2|chr16 (33808394-33808705) | |
| 7-222, gnl|rn3|chr10 (84217619-84217308) | |
| 7-222, gnl|tetNig1|chr2 (5596541-5596228) | |
| 7-222, gnl|xenTro1|scaffold_162 (71743-71432) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-840, gnl|bosTau2|chr5 (32463527-32462672) | |
| 1-840, gnl|Hg17|chr12 (55905568-55906431) | |
| 1-840, gnl|Mm7|chr10 (127027724-127026942) | |
| 7-222, gnl|bosTau2|chr19 (29805251-29805036) | |
| 7-222, gnl|canFam2|chr9 (28993281-28993592) | |
| 7-222, gnl|danRer3|chr9 (12732838-12732527) | |
| 7-222, gnl|dasNov1|scaffold_8300 (89389-89700) | |
| 7-222, gnl|echTel1|scaffold_90387 (1053-1364) | |
| 7-222, gnl|fr1|chrUn (38917307-38916996) | |
| 7-222, gnl|galGal2|chr7 (32104974-32104663) | |
| 7-222, gnl|hg17|chr17 (45011305-45011616) | |
| 7-222, gnl|Hg17|chr17 (45011432-45011647) | |
| 7-222, gnl|loxAfr1|scaffold_14391 (26008-26319) | |
| 7-222, gnl|mm7|chr11 (95620225-95619914) | |
| 7-222, gnl|Mm7|chr11 (95620096-95619881) | |
| 7-222, gnl|monDom2|scaffold_18 (44133371-44133060) | |
| 7-222, gnl|oryCun1|scaffold_184745 (7268-7579) | |
| 7-222, gnl|panTro1|chr19_random (30617064-30617374) | |
| 7-222, gnl|rheMac2|chr16 (33808394-33808705) | |
| 7-222, gnl|rn3|chr10 (84217619-84217308) | |
| 7-222, gnl|tetNig1|chr2 (5596541-5596228) | |
| 7-222, gnl|xenTro1|scaffold_162 (71743-71432) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fce (0.271592) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) |