Non-Coding RNA Search

Ss1.1-recc2822c_g24.5.5

Sequence:


               
               TTAAAAGCTGCAATATAATATAAGGAGAGACCAGAGGTAATTTCTCCTGTCATTTGGTTT
AGCTGGGGGTGGGGTGGGGGGACAGTTTCTTTAAAGTTTGACCATTATACCATAAGCCCT
CTATAGTATGTTTGGGGCTTGCCGAGTGTTGACTTTTTCAAGCTGAACTGATAGGCAATT
GGGGTTGCTTTAAATGTTCAGTGTATTTAGCAACTCCATAAAAAGAAACGTTCACTTAAT
TGACTTGTGCTTTTCCTTCTGTTACTAAATTCAGCTAAACATTTCCTATTGACACCAACT
GTTCATGATCCTGTGCACGTGGTCCATATAAGAGTAATACTAGACCTAAAGAAGCTATCC
TGCAGGTGCTAATTTATTCATCAGGGTGCACAGCCCTTGGGAATGTCACTGCTTAGCAAT
AGCATATGGAATGCCCTTTCCATTGCCATTTCTTTGTAAGTTCTCTTAAAGGGATCTGAG
CAAGCAAGAGGTTTTACCTACATGTCTCCAGTCTATGGTCCTGTAATATATTGCAGCTTG
AAGCCAATGATCCCTTATGACTTGTATACAACTAATGCATGTTTTAATTGAATTTTGCAT
TTCTCATGTGTGGTAAGTTCTTTAAAACGTTTTCGCTCACCTTTTGGTGCCATTAAACTT
GTACAGAAAACGCTTTTATGGCCATTTTCAAAGGGAGAAAGTTTAAAATGGAAACAGCCC
ACCCTTTCTGCCCTATAGCTGTAGTTAGAACTCAGTAACTGTAGCAAAACAGCTGTAATT
GGTGGTTGTAGTGTTAGAGGCGTTAGCTTGCTAGTGACTAGCTTTGGAGAGTAAATGCAT
GGTATTGTACATCACATTTCTTAAATAACTCATTCTAACCTCTGAAAAGAATATATTCTT
CCTTGTGGTCCCTCTTCCCTCCCTCGCCTTCTCCCTCCCCCTGCTCCCTGGTGTCTTGCA
GTTGTAAATAACTGATTTAGGGGCCAATAATTTTTGCCAAGTAAAGTCAGCAAAGAACAA
ACAAACCAAAAAGGGGGGGAGGCATTTCTCAACAGCCTCTTAGCAGTTATTAACCATTTC
TCAAGGAATGGCATTGTGATCAAAGACTCAGTTCCCCTTTGCATAAAAATCAGGGGCAGG
TTGGGCGCCTCTTGGGCTATTTGATGGCCTTGCAGAATTAAATCATTCTCAGGATCACAC
CTAATCGAAAATCAGTGGACAAAGATGTCCCTTAGCCCTGCAACAGTTTTGAGATATTCA
GGGGCCCGCAGAAGGCTCTGCTTGATCAATGATGGATAATTATTTTTAAAAAAGAAAAGA
AAAACAGAGCAAGACAACAGATATTTTAGGGATTTGTAGTTGCCCCTTTAGGATAGTTAT
GGCCAGAAAAGACAAGGACATGGGTTTATATGTATTGCTGTCGGCTTCCCAGGCAGTGCC
TCGCCTGCTCTTAGGCTGTGATTCAAAAGCAAGAAGGCGGCCTCCTTTTTGGTTTGCTGT
TCCCACTTGGACTGATAGGTTTGGTGAGGCCCACGTAAACCAGCTGGAGCAGACCCTTTT
CATCTCCTGTGCCTGTTAATATCCCTCTTCCTCCCTTCACAATTTGATGAGGGCTTTCTT
TGGTCAGAGGACTTCAAAGTCTAGAGAAGTTCCCCATGTGTATAGCGTGTTGTGAACTGT
GAACGCTGCGGATTCACAGCGTTCGATACCGGGCAGCCACGGAGCTGCTCTTGCAATCAT
TTTGGCTCTCAAGCTCTGCTCTTCATCTCATTCTCATTTATGTGTACATTTGCAAGATGT
GTGTAATGTCATTTTCCAAAAATAAAATTTGATTTCAATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAGCTGCAATATAATATAAGGAGAGACCAGAGGTAATTTCTCCTGTCATTTGGTTT
AGCTGGGGGTGGGGTGGGGGGACAGTTTCTTTAAAGTTTGACCATTATACCATAAGCCCT
CTATAGTATGTTTGGGGCTTGCCGAGTGTTGACTTTTTCAAGCTGAACTGATAGGCAATT
GGGGTTGCTTTAAATGTTCAGTGTATTTAGCAACTCCATAAAAAGAAACGTTCACTTAAT
TGACTTGTGCTTTTCCTTCTGTTACTAAATTCAGCTAAACATTTCCTATTGACACCAACT
GTTCATGATCCTGTGCACGTGGTCCATATAAGAGTAATACTAGACCTAAAGAAGCTATCC
TGCAGGTGCTAATTTATTCATCAGGGTGCACAGCCCTTGGGAATGTCACTGCTTAGCAAT
AGCATATGGAATGCCCTTTCCATTGCCATTTCTTTGTAAGTTCTCTTAAAGGGATCTGAG
CAAGCAAGAGGTTTTACCTACATGTCTCCAGTCTATGGTCCTGTAATATATTGCAGCTTG
AAGCCAATGATCCCTTATGACTTGTATACAACTAATGCATGTTTTAATTGAATTTTGCAT
TTCTCATGTGTGGTAAGTTCTTTAAAACGTTTTCGCTCACCTTTTGGTGCCATTAAACTT
GTACAGAAAACGCTTTTATGGCCATTTTCAAAGGGAGAAAGTTTAAAATGGAAACAGCCC
ACCCTTTCTGCCCTATAGCTGTAGTTAGAACTCAGTAACTGTAGCAAAACAGCTGTAATT
GGTGGTTGTAGTGTTAGAGGCGTTAGCTTGCTAGTGACTAGCTTTGGAGAGTAAATGCAT
GGTATTGTACATCACATTTCTTAAATAACTCATTCTAACCTCTGAAAAGAATATATTCTT
CCTTGTGGTCCCTCTTCCCTCCCTCGCCTTCTCCCTCCCCCTGCTCCCTGGTGTCTTGCA
GTTGTAAATAACTGATTTAGGGGCCAATAATTTTTGCCAAGTAAAGTCAGCAAAGAACAA
ACAAACCAAAAAGGGGGGGAGGCATTTCTCAACAGCCTCTTAGCAGTTATTAACCATTTC
TCAAGGAATGGCATTGTGATCAAAGACTCAGTTCCCCTTTGCATAAAAATCAGGGGCAGG
TTGGGCGCCTCTTGGGCTATTTGATGGCCTTGCAGAATTAAATCATTCTCAGGATCACAC
CTAATCGAAAATCAGTGGACAAAGATGTCCCTTAGCCCTGCAACAGTTTTGAGATATTCA
GGGGCCCGCAGAAGGCTCTGCTTGATCAATGATGGATAATTATTTTTAAAAAAGAAAAGA
AAAACAGAGCAAGACAACAGATATTTTAGGGATTTGTAGTTGCCCCTTTAGGATAGTTAT
GGCCAGAAAAGACAAGGACATGGGTTTATATGTATTGCTGTCGGCTTCCCAGGCAGTGCC
TCGCCTGCTCTTAGGCTGTGATTCAAAAGCAAGAAGGCGGCCTCCTTTTTGGTTTGCTGT
TCCCACTTGGACTGATAGGTTTGGTGAGGCCCACGTAAACCAGCTGGAGCAGACCCTTTT
CATCTCCTGTGCCTGTTAATATCCCTCTTCCTCCCTTCACAATTTGATGAGGGCTTTCTT
TGGTCAGAGGACTTCAAAGTCTAGAGAAGTTCCCCATGTGTATAGCGTGTTGTGAACTGT
GAACGCTGCGGATTCACAGCGTTCGATACCGGGCAGCCACGGAGCTGCTCTTGCAATCAT
TTTGGCTCTCAAGCTCTGCTCTTCATCTCATTCTCATTTATGTGTACATTTGCAAGATGT
GTGTAATGTCATTTTCCAAAAATAAAATTTGATTTCAATAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               684-802, - strand, RNAz p=0.629749
               

               
               1606-1759, + strand, RNAz p=0.818072

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               684-802, - strand, RNAz p=0.629749
               

               
               1606-1759, + strand, RNAz p=0.818072

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AJ003112, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ003112, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1840, gnl|bosTau2|chrX (19457562-19455697)
               

               
               1-1840, gnl|Hg17|chrX (110345000-110343152)
               

               
               1-1840, gnl|Mm7|chrX (138521972-138520162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1840, gnl|bosTau2|chrX (19457562-19455697)
               

               
               1-1840, gnl|Hg17|chrX (110345000-110343152)
               

               
               1-1840, gnl|Mm7|chrX (138521972-138520162)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ecc (1.15035)
               

               
               ece (0.917221)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               ese (0.253004)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (1.15035)
               

               
               ece (0.917221)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               ese (0.253004)

	684-802, - strand, RNAz p=0.629749
	1606-1759, + strand, RNAz p=0.818072

	1-1840, gnl\|bosTau2\|chrX (19457562-19455697)
	1-1840, gnl\|Hg17\|chrX (110345000-110343152)
	1-1840, gnl\|Mm7\|chrX (138521972-138520162)

	ecc (1.15035)
	ece (0.917221)
	ebs (0.828108)
	fce (0.814775)
	ese (0.253004)