Ss1.1-recc2822c_h3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGACAGAGCTGATGTTCGAGCAGTACAACATTCCTGCCTTCTTCTTATGCAAGACAGC TGTGCTTACCGCCTTTGCAAATGGACGCTCCACAGGTCTGGTGCTGGACAGTGGGGCCAC CCACACCACGGCCATTCCAGTGCATGATGGCTACGTCCTGCAGCAAGGCATTGTCAAGTC ACCCCTGGCAGGGGACTTCATCTCCATGCAGTGCCGAGAGCTCTTCCAGGAAATGGCCAT TGACATCATCCCACCTTACATGATCGCAGCCAAGGAGCCCGTTCGGGAGGGTGCCCCCCC CAACTGGAAGAAGAAAGAGAAGTTACCCCAGGTTTCCAAGTCCTGGCATAACTACATGTG CAATGAGGTGATCCAGGACTTTCAGGCCTCCGTGCTGCAGGTCTCAGACTCTCCCTACGA TGAGCAGGTGGCTGCGCAGATGCCCACAGTGCACTATGAGATGCCCAACGGCTACAACAC CGACTATGGTGCCGAGCGACTGCGCATCCCTGAGGGCCTGTTCGATCCCTCCAATGTCAA GGGCCTGTCGGGGAACACCATGTTGGGCGTGGGCCACGTGGTGACCACCAGCATCGGCAT GTGTGACATTGACATTCGCCCGGGCCTGTATGGCAGTGTCATTGTCACTGGAGGGAACAC ACTGCTCCAGGGCTTCACTGACAGGCTCAATCGAGAACTTTCCCAGAAGACTCCACCGAG CATGAGACTGAAGCTCATCGCCAGCAACAGCACCATGGAGCGCAAGTTCAGCCCCTGGAT TGGTGGCTCCATCCTGGCCTCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGACAGAGCTGATGTTCGAGCAGTACAACATTCCTGCCTTCTTCTTATGCAAGACAGC TGTGCTTACCGCCTTTGCAAATGGACGCTCCACAGGTCTGGTGCTGGACAGTGGGGCCAC CCACACCACGGCCATTCCAGTGCATGATGGCTACGTCCTGCAGCAAGGCATTGTCAAGTC ACCCCTGGCAGGGGACTTCATCTCCATGCAGTGCCGAGAGCTCTTCCAGGAAATGGCCAT TGACATCATCCCACCTTACATGATCGCAGCCAAGGAGCCCGTTCGGGAGGGTGCCCCCCC CAACTGGAAGAAGAAAGAGAAGTTACCCCAGGTTTCCAAGTCCTGGCATAACTACATGTG CAATGAGGTGATCCAGGACTTTCAGGCCTCCGTGCTGCAGGTCTCAGACTCTCCCTACGA TGAGCAGGTGGCTGCGCAGATGCCCACAGTGCACTATGAGATGCCCAACGGCTACAACAC CGACTATGGTGCCGAGCGACTGCGCATCCCTGAGGGCCTGTTCGATCCCTCCAATGTCAA GGGCCTGTCGGGGAACACCATGTTGGGCGTGGGCCACGTGGTGACCACCAGCATCGGCAT GTGTGACATTGACATTCGCCCGGGCCTGTATGGCAGTGTCATTGTCACTGGAGGGAACAC ACTGCTCCAGGGCTTCACTGACAGGCTCAATCGAGAACTTTCCCAGAAGACTCCACCGAG CATGAGACTGAAGCTCATCGCCAGCAACAGCACCATGGAGCGCAAGTTCAGCCCCTGGAT TGGTGGCTCCATCCTGGCCTCACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 166-275, gnl|bosTau2|chr25 (32337526-32337635) | |
| 166-275, gnl|canFam2|chr6 (12060664-12060541) | |
| 166-275, gnl|danRer3|chrNA (35876866-35876743) | |
| 166-275, gnl|echTel1|scaffold_304719 (1793-1670) | |
| 166-275, gnl|fr1|chrUn (100473599-100473484) | |
| 166-275, gnl|galGal2|chr9 (17036065-17035949) | |
| 166-275, gnl|hg17|chr7 (99890819-99890942) | |
| 166-275, gnl|Hg17|chr7 (99890938-99890829) | |
| 166-275, gnl|loxAfr1|scaffold_99129 (1851-1974) | |
| 166-275, gnl|mm7|chr5 (136483040-136482917) | |
| 166-275, gnl|Mm7|chr5 (136482919-136483028) | |
| 166-275, gnl|monDom2|scaffold_66 (2502704-2502831) | |
| 166-275, gnl|oryCun1|scaffold_170935 (5348-5226) | |
| 166-275, gnl|panTro1|chr6 (101666036-101666159) | |
| 166-275, gnl|rheMac2|chr3 (47833200-47833323) | |
| 166-275, gnl|rn3|chr12 (19623130-19623007) | |
| 166-275, gnl|tetNig1|chr1 (11922365-11922487) | |
| 166-275, gnl|xenTro1|scaffold_594 (551407-551294) | |
| 405-542, gnl|bosTau2|chr25 (32338742-32338882) | |
| 405-542, gnl|canFam2|chr6 (12061876-12061729) | |
| 405-542, gnl|danRer3|chrNA (35878312-35878194) | |
| 405-542, gnl|dasNov1|scaffold_291958 (867-737) | |
| 405-542, gnl|echTel1|scaffold_304719 (2983-2834) | |
| 405-542, gnl|fr1|chrUn (100474163-100474035) | |
| 405-542, gnl|galGal2|chr9 (17036902-17036766) | |
| 405-542, gnl|hg17|chr7 (99889226-99889375) | |
| 405-542, gnl|Hg17|chr7 (99889384-99889244) | |
| 405-542, gnl|loxAfr1|scaffold_99129 (581-730) | |
| 405-542, gnl|mm7|chr5 (136484933-136484783) | |
| 405-542, gnl|Mm7|chr5 (136484772-136484913) | |
| 405-542, gnl|monDom2|scaffold_66 (2500116-2500280) | |
| 405-542, gnl|oryCun1|scaffold_169609 (5040-4891) | |
| 405-542, gnl|panTro1|chr6 (101664444-101664593) | |
| 405-542, gnl|rheMac2|chr3 (47831619-47831768) | |
| 405-542, gnl|rn3|chr12 (19624874-19624724) | |
| 405-542, gnl|tetNig1|chr1 (11921765-11921900) | |
| 405-542, gnl|xenTro1|scaffold_594 (554224-554104) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-275, gnl|bosTau2|chr25 (32337526-32337635) | |
| 166-275, gnl|canFam2|chr6 (12060664-12060541) | |
| 166-275, gnl|danRer3|chrNA (35876866-35876743) | |
| 166-275, gnl|echTel1|scaffold_304719 (1793-1670) | |
| 166-275, gnl|fr1|chrUn (100473599-100473484) | |
| 166-275, gnl|galGal2|chr9 (17036065-17035949) | |
| 166-275, gnl|hg17|chr7 (99890819-99890942) | |
| 166-275, gnl|Hg17|chr7 (99890938-99890829) | |
| 166-275, gnl|loxAfr1|scaffold_99129 (1851-1974) | |
| 166-275, gnl|mm7|chr5 (136483040-136482917) | |
| 166-275, gnl|Mm7|chr5 (136482919-136483028) | |
| 166-275, gnl|monDom2|scaffold_66 (2502704-2502831) | |
| 166-275, gnl|oryCun1|scaffold_170935 (5348-5226) | |
| 166-275, gnl|panTro1|chr6 (101666036-101666159) | |
| 166-275, gnl|rheMac2|chr3 (47833200-47833323) | |
| 166-275, gnl|rn3|chr12 (19623130-19623007) | |
| 166-275, gnl|tetNig1|chr1 (11922365-11922487) | |
| 166-275, gnl|xenTro1|scaffold_594 (551407-551294) | |
| 405-542, gnl|bosTau2|chr25 (32338742-32338882) | |
| 405-542, gnl|canFam2|chr6 (12061876-12061729) | |
| 405-542, gnl|danRer3|chrNA (35878312-35878194) | |
| 405-542, gnl|dasNov1|scaffold_291958 (867-737) | |
| 405-542, gnl|echTel1|scaffold_304719 (2983-2834) | |
| 405-542, gnl|fr1|chrUn (100474163-100474035) | |
| 405-542, gnl|galGal2|chr9 (17036902-17036766) | |
| 405-542, gnl|hg17|chr7 (99889226-99889375) | |
| 405-542, gnl|Hg17|chr7 (99889384-99889244) | |
| 405-542, gnl|loxAfr1|scaffold_99129 (581-730) | |
| 405-542, gnl|mm7|chr5 (136484933-136484783) | |
| 405-542, gnl|Mm7|chr5 (136484772-136484913) | |
| 405-542, gnl|monDom2|scaffold_66 (2500116-2500280) | |
| 405-542, gnl|oryCun1|scaffold_169609 (5040-4891) | |
| 405-542, gnl|panTro1|chr6 (101664444-101664593) | |
| 405-542, gnl|rheMac2|chr3 (47831619-47831768) | |
| 405-542, gnl|rn3|chr12 (19624874-19624724) | |
| 405-542, gnl|tetNig1|chr1 (11921765-11921900) | |
| 405-542, gnl|xenTro1|scaffold_594 (554224-554104) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| ecc (0.115035) |