Non-Coding RNA Search

Ss1.1-recc2823c_b4.5

Sequence:


               
               TCAGTGACTCTG------------CTTCCTGTTAGACCTGCCCTCACC------------
CGTCTGCTGTGT------------CTCATAAGGACTAGTCCCTTCTGCGATATCAGAGCC
TTAGGGTGCCCCGTCCCCTCCCCCAGTCAGTTTTGGCACCTGTAACCTCCTGGAACATGA
AGGACTATGCTCTGAGGCCAGACTCCGAGCCCATGAGAGCAGAGACTGGACGGGCAAGAC
CAGGTGCTAAGGAGGGGAGAGCAGGGCTCTCTGTCTCTCTCCAGACCATCACTGCACTTT
AACCAGGGTCTTAGGTACAAAATCCTACTTTTCAGAGCCTTCCAGCTCTGGAACCTCAGA
CATCCTCATGCTCTCTCCCAGCTCCTTTTGCATAAAAAAGTAAAGAAAAAGTTAAAAAAA
AAAAAAATTGAAACCCACACGGAGAAAAGAGGTGTTTTCCTTTTATATTTAAAATCAACA
CCACACAAAAAATTTCTAAATAAACAATTTTCCAGACCTTTGTTTTTCGTGTCAGTGTCC
AAGCTGCGGATGGGATTTTGTAATACTTCTGGCAGCTCCTTTCCTTGTGTACATAATATA
TATATTATATATATTTTTAATCAGAAGTTATGAAGAACAAAAAGAAAAAAATAAAACACA
GAAGCAAGTGCAATACCACCTCTCTTCTCTCTCTCCCAGGGTTTCATTTGTAGCCTATGC
TTCGTGTCTCCTTGGACTTTACCCCTTCACCTCCTCCTCTTCCTCTGGTTCCCCCCCCTT
TTTTTTTTAAAAAAAAGAGTTTTTCTCCTTTCTCAAGGGGAGTTAAACTAGCTTTTGAGA
CTTATTGCAAAGCATTTTGTATATGTAATATATTGTAAGTAAATATTTGTGTAACGGAGA
TATACTACTGTAAGTTTTGTACTGTACTGGCTGAAGGTCTGTTATAAATAAACATGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTGACTCTG------------CTTCCTGTTAGACCTGCCCTCACC------------
CGTCTGCTGTGT------------CTCATAAGGACTAGTCCCTTCTGCGATATCAGAGCC
TTAGGGTGCCCCGTCCCCTCCCCCAGTCAGTTTTGGCACCTGTAACCTCCTGGAACATGA
AGGACTATGCTCTGAGGCCAGACTCCGAGCCCATGAGAGCAGAGACTGGACGGGCAAGAC
CAGGTGCTAAGGAGGGGAGAGCAGGGCTCTCTGTCTCTCTCCAGACCATCACTGCACTTT
AACCAGGGTCTTAGGTACAAAATCCTACTTTTCAGAGCCTTCCAGCTCTGGAACCTCAGA
CATCCTCATGCTCTCTCCCAGCTCCTTTTGCATAAAAAAGTAAAGAAAAAGTTAAAAAAA
AAAAAAATTGAAACCCACACGGAGAAAAGAGGTGTTTTCCTTTTATATTTAAAATCAACA
CCACACAAAAAATTTCTAAATAAACAATTTTCCAGACCTTTGTTTTTCGTGTCAGTGTCC
AAGCTGCGGATGGGATTTTGTAATACTTCTGGCAGCTCCTTTCCTTGTGTACATAATATA
TATATTATATATATTTTTAATCAGAAGTTATGAAGAACAAAAAGAAAAAAATAAAACACA
GAAGCAAGTGCAATACCACCTCTCTTCTCTCTCTCCCAGGGTTTCATTTGTAGCCTATGC
TTCGTGTCTCCTTGGACTTTACCCCTTCACCTCCTCCTCTTCCTCTGGTTCCCCCCCCTT
TTTTTTTTAAAAAAAAGAGTTTTTCTCCTTTCTCAAGGGGAGTTAAACTAGCTTTTGAGA
CTTATTGCAAAGCATTTTGTATATGTAATATATTGTAAGTAAATATTTGTGTAACGGAGA
TATACTACTGTAAGTTTTGTACTGTACTGGCTGAAGGTCTGTTATAAATAAACATGAGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               189-387, - strand, RNAz p=0.980619
               

               
               716-826, - strand, RNAz p=0.999607

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-387, - strand, RNAz p=0.980619
               

               
               716-826, - strand, RNAz p=0.999607

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-924, gnl|bosTau2|chr5 (33585465-33584589)
               

               
               49-924, gnl|Hg17|chr12 (54717579-54718476)
               

               
               49-924, gnl|Mm7|chr10 (128133626-128132617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-924, gnl|bosTau2|chr5 (33585465-33584589)
               

               
               49-924, gnl|Hg17|chr12 (54717579-54718476)
               

               
               49-924, gnl|Mm7|chr10 (128133626-128132617)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csk (0.140746)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               ecc (0.115035)

	189-387, - strand, RNAz p=0.980619
	716-826, - strand, RNAz p=0.999607

	49-924, gnl\|bosTau2\|chr5 (33585465-33584589)
	49-924, gnl\|Hg17\|chr12 (54717579-54718476)
	49-924, gnl\|Mm7\|chr10 (128133626-128132617)