Non-Coding RNA Search

Ss1.1-recc2823c_i18.5

Sequence:


               
               CCCAACTTTTTGATGTTCCTATAATCAAGGGGACAAGACAAGCCCAGCCAAAGCCCCATT
CTCAGCCTCCATAGACCCATCTGTGAGCAGCCCAAGCCAACCGGTGCTTCTCAGAGGCAG
GGCTCTGCAGGTCCAGATGGCCTCAATGTCACCACTCTGCAAGGCCCTATGTGCTGGATG
GTCCTGAAAACAGACAAGACCTCTGCCAGCCACCAGAGCCACCCGAGCCCTGCGTGTATT
CACACGCGCGCGTGGAAGAATGTCGATCAGCTGGGCTGCAGGCCCCCCCCCTTTCTGGTG
CATTCTTGTGTTTCATCCCTTCTTCTGGACTTTGGGTACCCTCCCAACTGCCACATCCCA
CCCTATTTAGTCCTCTCCTGTAGTCCCAGCCCTGTGTGATGACCTCTTTGGCAAGAGCTT
GGGAACAGGCCAGCCTGGGGAGGTAAGACTACTGCATCATTCCCTTTTCTCCCTTACTGT
GTAGCCCTTGTTGAGTCAGCCTCCCCACCCCCTTGGTCACTTTCAAAAGTGGCAGTTCCA
GGCATGTCCCTTCCTCAGGCATATGTGCTCACATTTCTAGTCACATGCACATTCTGAGCC
TCCCCTTGCAGCCTCGGACATGTGTCTGTCAGGTTTGGTCCATGAACATTTCAGGGGAGA
GCTTTCTCCCACTTAGCTGTCTTCGCAGACACTTCCTTAGGACGGGTGACCGACACTGCA
CTCAATGAGCCAGCCTCCCTTTTGGGGACCAAGCATTTGCTACCCCTAGACCAGAGCAGG
GGGAGGAGAGATCTGATGGGATCTGCACCTGGCACATGAAGCCCGTTCTTGGAACTATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAACTTTTTGATGTTCCTATAATCAAGGGGACAAGACAAGCCCAGCCAAAGCCCCATT
CTCAGCCTCCATAGACCCATCTGTGAGCAGCCCAAGCCAACCGGTGCTTCTCAGAGGCAG
GGCTCTGCAGGTCCAGATGGCCTCAATGTCACCACTCTGCAAGGCCCTATGTGCTGGATG
GTCCTGAAAACAGACAAGACCTCTGCCAGCCACCAGAGCCACCCGAGCCCTGCGTGTATT
CACACGCGCGCGTGGAAGAATGTCGATCAGCTGGGCTGCAGGCCCCCCCCCTTTCTGGTG
CATTCTTGTGTTTCATCCCTTCTTCTGGACTTTGGGTACCCTCCCAACTGCCACATCCCA
CCCTATTTAGTCCTCTCCTGTAGTCCCAGCCCTGTGTGATGACCTCTTTGGCAAGAGCTT
GGGAACAGGCCAGCCTGGGGAGGTAAGACTACTGCATCATTCCCTTTTCTCCCTTACTGT
GTAGCCCTTGTTGAGTCAGCCTCCCCACCCCCTTGGTCACTTTCAAAAGTGGCAGTTCCA
GGCATGTCCCTTCCTCAGGCATATGTGCTCACATTTCTAGTCACATGCACATTCTGAGCC
TCCCCTTGCAGCCTCGGACATGTGTCTGTCAGGTTTGGTCCATGAACATTTCAGGGGAGA
GCTTTCTCCCACTTAGCTGTCTTCGCAGACACTTCCTTAGGACGGGTGACCGACACTGCA
CTCAATGAGCCAGCCTCCCTTTTGGGGACCAAGCATTTGCTACCCCTAGACCAGAGCAGG
GGGAGGAGAGATCTGATGGGATCTGCACCTGGCACATGAAGCCCGTTCTTGGAACTATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18088076|gb|AAH20960.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088076|gb|AAH20960.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               108-264, - strand, RNAz p=0.989803
               

               
               655-771, - strand, RNAz p=0.786639

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-264, - strand, RNAz p=0.989803
               

               
               655-771, - strand, RNAz p=0.786639

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               108-840, gnl|bosTau2|chr26 (13389658-13390393)
               

               
               108-840, gnl|Hg17|chr10 (102734228-102734980)
               

               
               108-840, gnl|Mm7|chr19 (44896211-44896889)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-840, gnl|bosTau2|chr26 (13389658-13390393)
               

               
               108-840, gnl|Hg17|chr10 (102734228-102734980)
               

               
               108-840, gnl|Mm7|chr19 (44896211-44896889)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               fli (0.202881)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	108-264, - strand, RNAz p=0.989803
	655-771, - strand, RNAz p=0.786639

	108-840, gnl\|bosTau2\|chr26 (13389658-13390393)
	108-840, gnl\|Hg17\|chr10 (102734228-102734980)
	108-840, gnl\|Mm7\|chr19 (44896211-44896889)

	ece (0.229305)
	fli (0.202881)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)