Non-Coding RNA Search

Ss1.1-recc2823c_j10.5

Sequence:


               
               GCACCAGGCTACCTCACCCACAGCTGCCTGTGCCCATACAGGAGTGTGCACTGGTGACAC
GACCTGCATTTGCTGTGAAGGGTTTGGGAAAGCTTGTGATCTTGTAGAGCCTGGCCTGGC
ATGGATTGGCCTCTACCGGTGGGACTGAGCGGGTGAGAGGCTGGAACCGGAGGCAGCCCA
TGGCCAGGGGAGGATTTTCACAGCCACCTCACAGCTTTTGATTCTTGTACACAGGAGCCT
GGTGGAAACGACCTCAGGAAGCCTGCCATCTGTCACACCCTGAGTTCTTCTAGGCCCAGA
GAGGTGGGCTGGGCAGTGGGTTCCAGCTCCATTTTGTAGCTGGGAGAACTTACTGACCAG
CAGGCTGTGAGTCTGGATGAGAAAATGTGTGGATTTGTAGTTGGGTGCCCTGCTGCCTAC
AGGTGGTTCTTGGTGAAGCCAGGCTCCCAGATCCTGTGTCCTGGCCCAGGCTGGTGGTCT
CTCGGCCTCTTGTGAGCAGCAGCTGTGGACCAACACGAGAGAAGAGATGTCCACAACAGA
GCTATAGCAGGATCCTCCTTGTGGATTTGTCTCCTGTCAGAGCCCCAAGCCCCTCAAGAC
AGGGCCAGAGCACCATGCCTCTGCTTTGGGATGTGGGGACTGCAGCCTTTGCTTCTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAGGCTACCTCACCCACAGCTGCCTGTGCCCATACAGGAGTGTGCACTGGTGACAC
GACCTGCATTTGCTGTGAAGGGTTTGGGAAAGCTTGTGATCTTGTAGAGCCTGGCCTGGC
ATGGATTGGCCTCTACCGGTGGGACTGAGCGGGTGAGAGGCTGGAACCGGAGGCAGCCCA
TGGCCAGGGGAGGATTTTCACAGCCACCTCACAGCTTTTGATTCTTGTACACAGGAGCCT
GGTGGAAACGACCTCAGGAAGCCTGCCATCTGTCACACCCTGAGTTCTTCTAGGCCCAGA
GAGGTGGGCTGGGCAGTGGGTTCCAGCTCCATTTTGTAGCTGGGAGAACTTACTGACCAG
CAGGCTGTGAGTCTGGATGAGAAAATGTGTGGATTTGTAGTTGGGTGCCCTGCTGCCTAC
AGGTGGTTCTTGGTGAAGCCAGGCTCCCAGATCCTGTGTCCTGGCCCAGGCTGGTGGTCT
CTCGGCCTCTTGTGAGCAGCAGCTGTGGACCAACACGAGAGAAGAGATGTCCACAACAGA
GCTATAGCAGGATCCTCCTTGTGGATTTGTCTCCTGTCAGAGCCCCAAGCCCCTCAAGAC
AGGGCCAGAGCACCATGCCTCTGCTTTGGGATGTGGGGACTGCAGCCTTTGCTTCTATGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               237-349, - strand, RNAz p=0.645959
               

               
               543-659, - strand, RNAz p=0.595151

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-349, - strand, RNAz p=0.645959
               

               
               543-659, - strand, RNAz p=0.595151

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004567, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004567, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-659, gnl|bosTau2|chr22 (39624241-39623625)
               

               
               2-659, gnl|canFam2|chr20 (43585884-43584871)
               

               
               2-659, gnl|dasNov1|scaffold_55310 (9367-8453)
               

               
               2-659, gnl|hg17|chr3 (48530518-48531544)
               

               
               2-659, gnl|Hg17|chr3 (48531299-48530550)
               

               
               2-659, gnl|loxAfr1|scaffold_160013 (1179-133)
               

               
               2-659, gnl|mm7|chr9 (108742081-108741187)
               

               
               2-659, gnl|Mm7|chr9 (108741373-108742042)
               

               
               2-659, gnl|panTro1|chr2 (50016750-50017776)
               

               
               2-659, gnl|rheMac2|chr2 (87957793-87956756)
               

               
               2-659, gnl|rn3|chr8 (114071061-114070232)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-659, gnl|bosTau2|chr22 (39624241-39623625)
               

               
               2-659, gnl|canFam2|chr20 (43585884-43584871)
               

               
               2-659, gnl|dasNov1|scaffold_55310 (9367-8453)
               

               
               2-659, gnl|hg17|chr3 (48530518-48531544)
               

               
               2-659, gnl|Hg17|chr3 (48531299-48530550)
               

               
               2-659, gnl|loxAfr1|scaffold_160013 (1179-133)
               

               
               2-659, gnl|mm7|chr9 (108742081-108741187)
               

               
               2-659, gnl|Mm7|chr9 (108741373-108742042)
               

               
               2-659, gnl|panTro1|chr2 (50016750-50017776)
               

               
               2-659, gnl|rheMac2|chr2 (87957793-87956756)
               

               
               2-659, gnl|rn3|chr8 (114071061-114070232)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ecc (0.115035)

	237-349, - strand, RNAz p=0.645959
	543-659, - strand, RNAz p=0.595151

	2-659, gnl\|bosTau2\|chr22 (39624241-39623625)
	2-659, gnl\|canFam2\|chr20 (43585884-43584871)
	2-659, gnl\|dasNov1\|scaffold_55310 (9367-8453)
	2-659, gnl\|hg17\|chr3 (48530518-48531544)
	2-659, gnl\|Hg17\|chr3 (48531299-48530550)
	2-659, gnl\|loxAfr1\|scaffold_160013 (1179-133)
	2-659, gnl\|mm7\|chr9 (108742081-108741187)
	2-659, gnl\|Mm7\|chr9 (108741373-108742042)
	2-659, gnl\|panTro1\|chr2 (50016750-50017776)
	2-659, gnl\|rheMac2\|chr2 (87957793-87956756)
	2-659, gnl\|rn3\|chr8 (114071061-114070232)