Non-Coding RNA Search

Ss1.1-recc2824c_g5.5

Sequence:


               
               GTGTGGGAATTTTATACACACACACAGATGAGAGGATGTTTGGGGCTCAACGAGCCCAGA
TTTCTTCCCCCTCCATTTCTCAGGGAGACAAAGAACCTCCTTCCTGGACCAAGGAGTGCC
AAGTTTTCTAGCTAAGTGCCCAAGCAGACATTGATAGTGCCCCTGCCCTGGGTCCTGCCC
CTCCCCTCCCCCCACCACATCCCTGTCTCCATTCATTGCCTGGTGGACTAGAAATACTTA
AAACTTGAAGTAGTAGCATCTGCCTGCAGTCATGTAGAGAGATGCATAGTGTTAAAAACC
GAAACACCACACGTATTTTTTTCCTCTTGATTTTTAAATTTTTTAAGTGGCAAAGAATTC
ACCTTGCCTTCCTCCCCAGAATCTGCAACCTGTAAAAGATCTCCCCAAGCCAGAAGTCAG
GATTTAGCTTTCTGATCTCTGGCAGGAAAGGTCCACAGATTTTCCTCCATGTCCTTTGTC
CACTCTCAAACCCGCTAGCGTGGGTAACATCTGTGGATTAGTGTTAAAAATCAGTGAAGA
ATGGCCCTCTGTAGGAGAGAAAAATAAGCAAATATTTGGTCCATCTAAGGATTCGGTAGA
GAAAAAAATGTGTTGGCTGAGCCTATATCCCTCCCAGGAAGTCATAATCATAGTTGACAA
CTATGAAGTAGATACCATGCTAAGGACTTACACACCACCTCCCTGAATCTTCTCAACAGC
CTAGTGACTTAGAAACCATTATTTCCCCATTTCACACAAGACAAAATTGAGGCTCAGATA
AGAGAAAGGCACTGGCTTGCAAAACAGGAATAAGGATTTGGTCCTGCCTCTGTCTGACTC
CTAACCCGGCTGTCTATGTTAGGAGAAGGAATTAAAACATAACCATGCTCTAACACACAG
AAAGATTTAGGAAGAGATTAAGAAGGGCAAACTAGACCCTCTTCCTTGGCCGTGGTCTTT
AGTCTTCCCTGCTCTAGACATAACCCACTGTTGCACCTTATGGTTATTGTTGAGAAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGGAATTTTATACACACACACAGATGAGAGGATGTTTGGGGCTCAACGAGCCCAGA
TTTCTTCCCCCTCCATTTCTCAGGGAGACAAAGAACCTCCTTCCTGGACCAAGGAGTGCC
AAGTTTTCTAGCTAAGTGCCCAAGCAGACATTGATAGTGCCCCTGCCCTGGGTCCTGCCC
CTCCCCTCCCCCCACCACATCCCTGTCTCCATTCATTGCCTGGTGGACTAGAAATACTTA
AAACTTGAAGTAGTAGCATCTGCCTGCAGTCATGTAGAGAGATGCATAGTGTTAAAAACC
GAAACACCACACGTATTTTTTTCCTCTTGATTTTTAAATTTTTTAAGTGGCAAAGAATTC
ACCTTGCCTTCCTCCCCAGAATCTGCAACCTGTAAAAGATCTCCCCAAGCCAGAAGTCAG
GATTTAGCTTTCTGATCTCTGGCAGGAAAGGTCCACAGATTTTCCTCCATGTCCTTTGTC
CACTCTCAAACCCGCTAGCGTGGGTAACATCTGTGGATTAGTGTTAAAAATCAGTGAAGA
ATGGCCCTCTGTAGGAGAGAAAAATAAGCAAATATTTGGTCCATCTAAGGATTCGGTAGA
GAAAAAAATGTGTTGGCTGAGCCTATATCCCTCCCAGGAAGTCATAATCATAGTTGACAA
CTATGAAGTAGATACCATGCTAAGGACTTACACACCACCTCCCTGAATCTTCTCAACAGC
CTAGTGACTTAGAAACCATTATTTCCCCATTTCACACAAGACAAAATTGAGGCTCAGATA
AGAGAAAGGCACTGGCTTGCAAAACAGGAATAAGGATTTGGTCCTGCCTCTGTCTGACTC
CTAACCCGGCTGTCTATGTTAGGAGAAGGAATTAAAACATAACCATGCTCTAACACACAG
AAAGATTTAGGAAGAGATTAAGAAGGGCAAACTAGACCCTCTTCCTTGGCCGTGGTCTTT
AGTCTTCCCTGCTCTAGACATAACCCACTGTTGCACCTTATGGTTATTGTTGAGAAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-523, - strand, RNAz p=0.997694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-523, - strand, RNAz p=0.997694

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               50-1020, gnl|bosTau2|chr7 (2669539-2670506)
               

               
               50-1020, gnl|Hg17|chr19 (19222492-19223593)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-1020, gnl|bosTau2|chr7 (2669539-2670506)
               

               
               50-1020, gnl|Hg17|chr19 (19222492-19223593)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.687916)
               

               
               ecc (0.46014)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               ecc (0.46014)
               

               
               fcc (0.197785)
               

               
               ebs (0.118301)

	50-1020, gnl\|bosTau2\|chr7 (2669539-2670506)
	50-1020, gnl\|Hg17\|chr19 (19222492-19223593)