Ss1.1-recc2824c_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTGATTAAACAGGAATTGGAGAAGTATAATGTCTCAGGAAGGCGATTACGGAAGGTGG ACCATATCCAGTAGCGATGAAAGCGAGGAGGAGAAGCCAAAACCAGACAAGCCATCTACC TCTTTGCTCCCCCACGCTGGGCAGGGAGCAGCCCACGAGCCAAAGTACACCTGCTCCGAG GCGCGGCGAGCCGCCCACAGGAGAAAGATCGACCCCGTGAGGTTCAGCAACGCAGACCCA GTGTCAGAAGCATCCCCTCCCAAGAGGCAGAAGAGTGGCTCCCAGGAAGACCTGGGCTGG TGCCTCTCCAGCAGTGAGGATGAGCTGCCCCCAGAGAAGCAGCAGAAGCCGGCTAAGGAA GCGGGGATCAAAGAGGAGAAAGGCCCCCCTTCTCCCAGAGATGGATCTGGGCACCACGGC CCTCCTGCCAGCCACGGGCTCAAAGAGGAGGAAGAGGAGCTCGAGACGTCAGGGGGAGGC CAGGACATTTGGGACATGCTGGACAAAGGGAACCCCTTCCAATTTTACCTCACCAGAGTC TCCGGAATTAAGCCCAAGTACAACTCGGGAGCTCTCCACATCAGGGATATTTTATCTCCT CTGTTTGGGACACTTGTTTCTTCAGCTCAGTTTAACTACTGCTTTGACGTGGACTGGCTC GTAAAACAGTATCCACCGGAGTTCAGGAAGAAACCAGTCCTGCTTGTGCATGGCGACAAG CGAGAGGCAAAGGCTCACTTACACGCCCAGGCGAAGCCTTATGAAAACATTTCGCTCTGC CAGGCAAAGTTGGATATTGCATTTGGAACACATCACACGAAAATGATGCTCCTGCTGTAC GAGGAAGGCCTCCGTGTCGTCATACACACCTCCAACCTCATCCACGCCGACTGGCACCAG AAAACACAAGGATATGGTTGAGCCCCTTATACCAACGAATCGTCCCTGGGAGCCACAGAT CCGGAGAATCAGCCACACACTTTAAAGCTGACCTCATCAGCTATTTGTCGGCTTATAACG CCGCTGCCCTCAAAGAATGGATAGACACCATCCAGGAGCATGACCTCTCGGAAACAAATG TTTACCTTATTGGCTCAACCCCGGGACGCTTTCAAGGAGATCAAAAAGATAATTGGGGAC ATTTTAGGCTTAGGAAGCTCCTGAAAGAGAATGGCTCCTCCATCCCTAAAGCAGAGTCCT GGCCGGTTGTAGGTCAGTTTTCGAGCATCGGCTCCATGGGGGCCGACGAATCAAAATGGT TGTGTTCTGAGTTTAAAGAGAGCTTGGTGACCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTGATTAAACAGGAATTGGAGAAGTATAATGTCTCAGGAAGGCGATTACGGAAGGTGG ACCATATCCAGTAGCGATGAAAGCGAGGAGGAGAAGCCAAAACCAGACAAGCCATCTACC TCTTTGCTCCCCCACGCTGGGCAGGGAGCAGCCCACGAGCCAAAGTACACCTGCTCCGAG GCGCGGCGAGCCGCCCACAGGAGAAAGATCGACCCCGTGAGGTTCAGCAACGCAGACCCA GTGTCAGAAGCATCCCCTCCCAAGAGGCAGAAGAGTGGCTCCCAGGAAGACCTGGGCTGG TGCCTCTCCAGCAGTGAGGATGAGCTGCCCCCAGAGAAGCAGCAGAAGCCGGCTAAGGAA GCGGGGATCAAAGAGGAGAAAGGCCCCCCTTCTCCCAGAGATGGATCTGGGCACCACGGC CCTCCTGCCAGCCACGGGCTCAAAGAGGAGGAAGAGGAGCTCGAGACGTCAGGGGGAGGC CAGGACATTTGGGACATGCTGGACAAAGGGAACCCCTTCCAATTTTACCTCACCAGAGTC TCCGGAATTAAGCCCAAGTACAACTCGGGAGCTCTCCACATCAGGGATATTTTATCTCCT CTGTTTGGGACACTTGTTTCTTCAGCTCAGTTTAACTACTGCTTTGACGTGGACTGGCTC GTAAAACAGTATCCACCGGAGTTCAGGAAGAAACCAGTCCTGCTTGTGCATGGCGACAAG CGAGAGGCAAAGGCTCACTTACACGCCCAGGCGAAGCCTTATGAAAACATTTCGCTCTGC CAGGCAAAGTTGGATATTGCATTTGGAACACATCACACGAAAATGATGCTCCTGCTGTAC GAGGAAGGCCTCCGTGTCGTCATACACACCTCCAACCTCATCCACGCCGACTGGCACCAG AAAACACAAGGATATGGTTGAGCCCCTTATACCAACGAATCGTCCCTGGGAGCCACAGAT CCGGAGAATCAGCCACACACTTTAAAGCTGACCTCATCAGCTATTTGTCGGCTTATAACG CCGCTGCCCTCAAAGAATGGATAGACACCATCCAGGAGCATGACCTCTCGGAAACAAATG TTTACCTTATTGGCTCAACCCCGGGACGCTTTCAAGGAGATCAAAAAGATAATTGGGGAC ATTTTAGGCTTAGGAAGCTCCTGAAAGAGAATGGCTCCTCCATCCCTAAAGCAGAGTCCT GGCCGGTTGTAGGTCAGTTTTCGAGCATCGGCTCCATGGGGGCCGACGAATCAAAATGGT TGTGTTCTGAGTTTAAAGAGAGCTTGGTGACCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 338-1274, + strand, RNAz p=0.805389 | |
| 961-1078, - strand, RNAz p=0.754475 | |
| 962-1078, - strand, RNAz p=0.872058 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-1274, + strand, RNAz p=0.805389 | |
| 961-1078, - strand, RNAz p=0.754475 | |
| 962-1078, - strand, RNAz p=0.872058 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX161451, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 22-586, gnl|bosTau2|chr10 (69706944-69706368) | |
| 22-586, gnl|Hg17|chr14 (89499203-89499770) | |
| 22-586, gnl|Mm7|chr12 (97385909-97386479) | |
| 682-800, gnl|bosTau2|chr10 (69698061-69697944) | |
| 682-800, gnl|canFam2|chr8 (64074659-64074801) | |
| 682-800, gnl|danRer3|chr17 (12520959-12521097) | |
| 682-800, gnl|echTel1|scaffold_226300 (10192-10028) | |
| 682-800, gnl|fr1|chrUn (163963569-163963425) | |
| 682-800, gnl|galGal2|chr5 (40491301-40491436) | |
| 682-800, gnl|hg17|chr14 (89507234-89507398) | |
| 682-800, gnl|Hg17|chr14 (89507267-89507384) | |
| 682-800, gnl|loxAfr1|scaffold_45995 (3895-3743) | |
| 682-800, gnl|mm7|chr12 (97392980-97393122) | |
| 682-800, gnl|Mm7|chr12 (97392993-97393110) | |
| 682-800, gnl|panTro1|chr15 (89771185-89771349) | |
| 682-800, gnl|rheMac2|chr7 (153186692-153186856) | |
| 682-800, gnl|rn3|chr6 (124112928-124113066) | |
| 682-800, gnl|tetNig1|chrUn_random (136432853-136432972) | |
| 682-800, gnl|xenTro1|scaffold_22 (2081765-2081924) | |
| 909-1078, gnl|bosTau2|chr10 (69684021-69683852) | |
| 909-1078, gnl|canFam2|chr8 (64086738-64086864) | |
| 909-1078, gnl|danRer3|chr17 (12531902-12532031) | |
| 909-1078, gnl|dasNov1|scaffold_1732 (28783-28909) | |
| 909-1078, gnl|fr1|chrUn (163962987-163962858) | |
| 909-1078, gnl|galGal2|chr5 (40494202-40494331) | |
| 909-1078, gnl|hg17|chr14 (89520612-89520738) | |
| 909-1078, gnl|Hg17|chr14 (89520611-89520780) | |
| 909-1078, gnl|loxAfr1|scaffold_38464 (8187-8313) | |
| 909-1078, gnl|mm7|chr12 (97404659-97404785) | |
| 909-1078, gnl|Mm7|chr12 (97404658-97404827) | |
| 909-1078, gnl|monDom2|scaffold_8 (37026025-37025896) | |
| 909-1078, gnl|oryCun1|scaffold_204887 (20788-20914) | |
| 909-1078, gnl|panTro1|chr15 (89784606-89784732) | |
| 909-1078, gnl|rheMac2|chr7 (153205989-153206115) | |
| 909-1078, gnl|rn3|chr6 (124125179-124125305) | |
| 909-1078, gnl|tetNig1|chrUn_random (136433649-136433778) | |
| 909-1078, gnl|xenTro1|scaffold_22 (2087712-2087841) | |
| 1156-1296, gnl|bosTau2|chr10 (69680748-69680608) | |
| 1156-1296, gnl|Hg17|chr14 (89525000-89525140) | |
| 1156-1296, gnl|Mm7|chr12 (97406574-97406714) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-586, gnl|bosTau2|chr10 (69706944-69706368) | |
| 22-586, gnl|Hg17|chr14 (89499203-89499770) | |
| 22-586, gnl|Mm7|chr12 (97385909-97386479) | |
| 682-800, gnl|bosTau2|chr10 (69698061-69697944) | |
| 682-800, gnl|canFam2|chr8 (64074659-64074801) | |
| 682-800, gnl|danRer3|chr17 (12520959-12521097) | |
| 682-800, gnl|echTel1|scaffold_226300 (10192-10028) | |
| 682-800, gnl|fr1|chrUn (163963569-163963425) | |
| 682-800, gnl|galGal2|chr5 (40491301-40491436) | |
| 682-800, gnl|hg17|chr14 (89507234-89507398) | |
| 682-800, gnl|Hg17|chr14 (89507267-89507384) | |
| 682-800, gnl|loxAfr1|scaffold_45995 (3895-3743) | |
| 682-800, gnl|mm7|chr12 (97392980-97393122) | |
| 682-800, gnl|Mm7|chr12 (97392993-97393110) | |
| 682-800, gnl|panTro1|chr15 (89771185-89771349) | |
| 682-800, gnl|rheMac2|chr7 (153186692-153186856) | |
| 682-800, gnl|rn3|chr6 (124112928-124113066) | |
| 682-800, gnl|tetNig1|chrUn_random (136432853-136432972) | |
| 682-800, gnl|xenTro1|scaffold_22 (2081765-2081924) | |
| 909-1078, gnl|bosTau2|chr10 (69684021-69683852) | |
| 909-1078, gnl|canFam2|chr8 (64086738-64086864) | |
| 909-1078, gnl|danRer3|chr17 (12531902-12532031) | |
| 909-1078, gnl|dasNov1|scaffold_1732 (28783-28909) | |
| 909-1078, gnl|fr1|chrUn (163962987-163962858) | |
| 909-1078, gnl|galGal2|chr5 (40494202-40494331) | |
| 909-1078, gnl|hg17|chr14 (89520612-89520738) | |
| 909-1078, gnl|Hg17|chr14 (89520611-89520780) | |
| 909-1078, gnl|loxAfr1|scaffold_38464 (8187-8313) | |
| 909-1078, gnl|mm7|chr12 (97404659-97404785) | |
| 909-1078, gnl|Mm7|chr12 (97404658-97404827) | |
| 909-1078, gnl|monDom2|scaffold_8 (37026025-37025896) | |
| 909-1078, gnl|oryCun1|scaffold_204887 (20788-20914) | |
| 909-1078, gnl|panTro1|chr15 (89784606-89784732) | |
| 909-1078, gnl|rheMac2|chr7 (153205989-153206115) | |
| 909-1078, gnl|rn3|chr6 (124125179-124125305) | |
| 909-1078, gnl|tetNig1|chrUn_random (136433649-136433778) | |
| 909-1078, gnl|xenTro1|scaffold_22 (2087712-2087841) | |
| 1156-1296, gnl|bosTau2|chr10 (69680748-69680608) | |
| 1156-1296, gnl|Hg17|chr14 (89525000-89525140) | |
| 1156-1296, gnl|Mm7|chr12 (97406574-97406714) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| eep (0.122564) | |
| ecc (0.115035) |