Ss1.1-recc2824c_p21.5
|
CCCACCCCGAGAGACCTGGCAGAGACCCCTCTTCCTGAGAACCCCCAACCTGATCTCCCA
TCACAGCCCCCAGGACCTAGGGGAACCTGACAGAGCCCATGGCATTCCCCCTTCCCTGTC
TTGGACAACTGGGTTGTCAGGGTCCCAGCTGGCCTGATACCTTCTAGCTTTTCACAGAAA
GCACCCCTCCTCTCCTGACCTGGGCTCTCTACACTCTCCCACACACAGCCTGACCTGCCG
CCAGCCTCTTCATTGGGCGGCTCTACTAACTACCCAGAGAAGCACACTCTTGCTTGCTGT
CAGATTCTAGAACACCATGGAAGGTCCAAGGGCCTCCTCTGCCAGGGAAACCTTTTAAAT
TTAGAGTCTTGTCCATGGAATAAGTCCCATAGTCTCTCTACACTGTCTGCTGGTAGCTCT
AATACTGCTTTGTGCTACCGACCACAGCCACCATCTCCACCTGCTGACAGCCGCCAGTGA
ATGAGCCCTGCTTGAGAGCAGTCCAGTCAGGTAGGACAGGGACCTACCAACTCCCCAGAG
GGATCACTCAACATTGCCAAACACTTAATTTCCACATGTTCTGTGTATGTGTCAGGGGAC
CCCCAAGCTTATGTCTGCTTTGGGCCTCTAAAGACTCGCCACACTTTTAACAGACACCAC
CACTTCCCCCAGATCCAGGTTCTGTAAGGGAGTTTGCTTCTTGGCGTCAATCCCAGCCAG
CACCCCAGGGTCACTCTTGGCCGAGTTCCAGAAGCTAAGCCTGAGTCTCCAGGCTCTATT
AGCTTCTGGAACACCCTCTTGCAGCCATCCCTCCCCGGAAGCTAGATGCCGATAGATTCC
TGTCTCGTGAGATTGTCTTGAGATGAGGCGGGGGAGCTCTTCCCCTAGCCTTCCTTCCTT
CCTCCATAGCAAGAGCCTTCCTCCCTGCTCCACACCCAGAGTGGACAACACCCTTCCCTC
TCCCGACCCTCTGAATGTGTGCTAGATCAGGTACCCCTGCTGTGTTCCCCCAAATCCTTG
GGAGCAGGATCTCCCTCTCTTCTGACTCACCCCTCCTTTTTCTTCTTCCTCTCAGTGTTG
TCTGAATAAAGTGTGAATTCTTTTGTGTTTTTTAAATGGACATTTTCAATGAAAAAAACT
TCAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCACCCCGAGAGACCTGGCAGAGACCCCTCTTCCTGAGAACCCCCAACCTGATCTCCCA
TCACAGCCCCCAGGACCTAGGGGAACCTGACAGAGCCCATGGCATTCCCCCTTCCCTGTC
TTGGACAACTGGGTTGTCAGGGTCCCAGCTGGCCTGATACCTTCTAGCTTTTCACAGAAA
GCACCCCTCCTCTCCTGACCTGGGCTCTCTACACTCTCCCACACACAGCCTGACCTGCCG
CCAGCCTCTTCATTGGGCGGCTCTACTAACTACCCAGAGAAGCACACTCTTGCTTGCTGT
CAGATTCTAGAACACCATGGAAGGTCCAAGGGCCTCCTCTGCCAGGGAAACCTTTTAAAT
TTAGAGTCTTGTCCATGGAATAAGTCCCATAGTCTCTCTACACTGTCTGCTGGTAGCTCT
AATACTGCTTTGTGCTACCGACCACAGCCACCATCTCCACCTGCTGACAGCCGCCAGTGA
ATGAGCCCTGCTTGAGAGCAGTCCAGTCAGGTAGGACAGGGACCTACCAACTCCCCAGAG
GGATCACTCAACATTGCCAAACACTTAATTTCCACATGTTCTGTGTATGTGTCAGGGGAC
CCCCAAGCTTATGTCTGCTTTGGGCCTCTAAAGACTCGCCACACTTTTAACAGACACCAC
CACTTCCCCCAGATCCAGGTTCTGTAAGGGAGTTTGCTTCTTGGCGTCAATCCCAGCCAG
CACCCCAGGGTCACTCTTGGCCGAGTTCCAGAAGCTAAGCCTGAGTCTCCAGGCTCTATT
AGCTTCTGGAACACCCTCTTGCAGCCATCCCTCCCCGGAAGCTAGATGCCGATAGATTCC
TGTCTCGTGAGATTGTCTTGAGATGAGGCGGGGGAGCTCTTCCCCTAGCCTTCCTTCCTT
CCTCCATAGCAAGAGCCTTCCTCCCTGCTCCACACCCAGAGTGGACAACACCCTTCCCTC
TCCCGACCCTCTGAATGTGTGCTAGATCAGGTACCCCTGCTGTGTTCCCCCAAATCCTTG
GGAGCAGGATCTCCCTCTCTTCTGACTCACCCCTCCTTTTTCTTCTTCCTCTCAGTGTTG
TCTGAATAAAGTGTGAATTCTTTTGTGTTTTTTAAATGGACATTTTCAATGAAAAAAACT
TCAAAAAAAAAA
|
|
34-151, - strand, RNAz p=0.658458 |
|
70-166, - strand, RNAz p=0.632808 |
|
263-422, - strand, RNAz p=0.849516 |
|
413-510, - strand, RNAz p=0.627312 |
|
631-828, - strand, RNAz p=0.999589 |
|
697-853, - strand, RNAz p=0.997285 |
|
867-1022, - strand, RNAz p=0.998427 |
|
891-1004, - strand, RNAz p=0.912333 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
34-151, - strand, RNAz p=0.658458 |
|
70-166, - strand, RNAz p=0.632808 |
|
263-422, - strand, RNAz p=0.849516 |
|
413-510, - strand, RNAz p=0.627312 |
|
631-828, - strand, RNAz p=0.999589 |
|
697-853, - strand, RNAz p=0.997285 |
|
867-1022, - strand, RNAz p=0.998427 |
|
891-1004, - strand, RNAz p=0.912333 |
|
940-1048, - strand, RNAmicro p=0.993881 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
940-1048, - strand, RNAmicro p=0.993881 |
|
674-827, AV611565 Bos taurus lung fetus Bos taurus cDNA clone E1LU040D10 3',
(dbj|AV611565.1|), blast E-value=4e-21, identity=84.52% |
|
674-827, BE04024A1C12 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN440865.1|), blast E-value=2e-23, identity=85.16% |
|
674-827, 1474749 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892333.1|),
blast E-value=4e-21, identity=84.52% |
|
674-827, 1478109 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT895108.1|),
blast E-value=4e-21, identity=84.52% |
|
710-853, AV611565 Bos taurus lung fetus Bos taurus cDNA clone E1LU040D10 3',
(dbj|AV611565.1|), blast E-value=1e-23, identity=85.62% |
|
710-853, BE04024A1C12 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN440865.1|), blast E-value=1e-23, identity=85.62% |
|
710-853, 1474749 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892333.1|),
blast E-value=1e-23, identity=85.62% |
|
710-853, 1478109 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT895108.1|),
blast E-value=1e-23, identity=85.62% |
|
710-853, 1606327 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY465746.1|),
blast E-value=1e-23, identity=85.62% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
674-827, AV611565 Bos taurus lung fetus Bos taurus cDNA clone E1LU040D10 3',
(dbj|AV611565.1|), blast E-value=4e-21, identity=84.52% |
|
674-827, BE04024A1C12 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN440865.1|), blast E-value=2e-23, identity=85.16% |
|
674-827, 1474749 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892333.1|),
blast E-value=4e-21, identity=84.52% |
|
674-827, 1478109 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT895108.1|),
blast E-value=4e-21, identity=84.52% |
|
710-853, AV611565 Bos taurus lung fetus Bos taurus cDNA clone E1LU040D10 3',
(dbj|AV611565.1|), blast E-value=1e-23, identity=85.62% |
|
710-853, BE04024A1C12 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN440865.1|), blast E-value=1e-23, identity=85.62% |
|
710-853, 1474749 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892333.1|),
blast E-value=1e-23, identity=85.62% |
|
710-853, 1478109 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT895108.1|),
blast E-value=1e-23, identity=85.62% |
|
710-853, 1606327 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY465746.1|),
blast E-value=1e-23, identity=85.62% |
|
1-1149, gnl|bosTau2|chr23 (20858229-20857069) |
|
1-1149, gnl|canFam2|chr12 (3454742-3455449) |
|
1-1149, gnl|hg17|chr6 (30719310-30720016) |
|
1-1149, gnl|Hg17|chr6 (30719332-30720429) |
|
1-1149, gnl|loxAfr1|scaffold_203331 (690-4) |
|
1-1149, gnl|mm7|chr17 (34005023-34004407) |
|
1-1149, gnl|Mm7|chr17 (34005010-34004001) |
|
1-1149, gnl|monDom2|scaffold_42 (18679718-18678788) |
|
1-1149, gnl|oryCun1|scaffold_213280 (7650-7051) |
|
1-1149, gnl|panTro1|chr5 (31180577-31181283) |
|
1-1149, gnl|rheMac2|chr4 (30224432-30225139) |
|
1-1149, gnl|rn3|chr20 (3002739-3003323) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1149, gnl|bosTau2|chr23 (20858229-20857069) |
|
1-1149, gnl|canFam2|chr12 (3454742-3455449) |
|
1-1149, gnl|hg17|chr6 (30719310-30720016) |
|
1-1149, gnl|Hg17|chr6 (30719332-30720429) |
|
1-1149, gnl|loxAfr1|scaffold_203331 (690-4) |
|
1-1149, gnl|mm7|chr17 (34005023-34004407) |
|
1-1149, gnl|Mm7|chr17 (34005010-34004001) |
|
1-1149, gnl|monDom2|scaffold_42 (18679718-18678788) |
|
1-1149, gnl|oryCun1|scaffold_213280 (7650-7051) |
|
1-1149, gnl|panTro1|chr5 (31180577-31181283) |
|
1-1149, gnl|rheMac2|chr4 (30224432-30225139) |
|
1-1149, gnl|rn3|chr20 (3002739-3003323) |
|
ecc (0.920281) |
|
ece (0.687916) |
|
eye (0.341006) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
ebs (0.118301) |
|
ecc (0.920281) |
|
ece (0.687916) |
|
eye (0.341006) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
ebs (0.118301) |
