Non-Coding RNA Search

Ss1.1-recc2825c_c9.5

Sequence:


               
               GACCCGGGTCACCACCTGTCAGCTGTACCTGGGACCATGTGCTCTTGGGGCCACAAGGCT
CCACTGGACATACTTTTTATTTTTTTTTATTTTTTTTTTATTTTTGGCCGCACCTGCGGC
ATGTGGAAGTTCTTGGGGCAGGGATTGAATCCGTGCCACAGCAGTGACGCAGGCCGCTGC
AGTAACAGTGCTGGATCCTTAACCCACCGCACCACAAGAGAACTCCTTCACCGGACATAC
TTTTGACAGCAGGTTGAGGAAGAACCAGCTATGCCTGCTGCCTGCCTCTCTCCCAGCGTG
TTTCCAGCAAGTAGATGTCTCCATAGCCGTCTTCCCTTACCCTGCTTCCTGCCTTATTTC
CTGTACCTCGACCTGTGAGTTGAGCGTCCTTCTTGTTTACCTTAGGCCTCCCCGTGTGAG
TGCTTCTGTGTGAGCTGTAAAATTGGTATGACTTCAGCAAGTCTCATTTCATCTGAAAGG
TCTTCCCCCAACCTCACTTTTCATCCAGTGTGGCATTTCTGTCATCTGAAGCGTGAGTGG
GAAATTGGCAAAGATTTGGTGGTGATTAAAGCGCAGTATTGGCCAAGTCCCAGTTGTCAG
CTTCAAGAGTCTGTTTACCAAAGACAGGGAACAGAGGCCCAAGTGTGTTTGATCCTCTTC
TTCCTTCTGCTGTGACCTTCGGGGCCGCTCTAGGGGACAGTTGGAAACTGGTCTGCCAGG
GAAAGCACTGCTCTTGTATGTCTCTGTGGTCTTGGAAAAATAAACCTGTACAACCTGCAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCGGGTCACCACCTGTCAGCTGTACCTGGGACCATGTGCTCTTGGGGCCACAAGGCT
CCACTGGACATACTTTTTATTTTTTTTTATTTTTTTTTTATTTTTGGCCGCACCTGCGGC
ATGTGGAAGTTCTTGGGGCAGGGATTGAATCCGTGCCACAGCAGTGACGCAGGCCGCTGC
AGTAACAGTGCTGGATCCTTAACCCACCGCACCACAAGAGAACTCCTTCACCGGACATAC
TTTTGACAGCAGGTTGAGGAAGAACCAGCTATGCCTGCTGCCTGCCTCTCTCCCAGCGTG
TTTCCAGCAAGTAGATGTCTCCATAGCCGTCTTCCCTTACCCTGCTTCCTGCCTTATTTC
CTGTACCTCGACCTGTGAGTTGAGCGTCCTTCTTGTTTACCTTAGGCCTCCCCGTGTGAG
TGCTTCTGTGTGAGCTGTAAAATTGGTATGACTTCAGCAAGTCTCATTTCATCTGAAAGG
TCTTCCCCCAACCTCACTTTTCATCCAGTGTGGCATTTCTGTCATCTGAAGCGTGAGTGG
GAAATTGGCAAAGATTTGGTGGTGATTAAAGCGCAGTATTGGCCAAGTCCCAGTTGTCAG
CTTCAAGAGTCTGTTTACCAAAGACAGGGAACAGAGGCCCAAGTGTGTTTGATCCTCTTC
TTCCTTCTGCTGTGACCTTCGGGGCCGCTCTAGGGGACAGTTGGAAACTGGTCTGCCAGG
GAAAGCACTGCTCTTGTATGTCTCTGTGGTCTTGGAAAAATAAACCTGTACAACCTGCAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               226-779, gnl|bosTau2|chr13 (42756790-42756243)
               

               
               226-779, gnl|Hg17|chr20 (30490246-30490783)
               

               
               226-779, gnl|Mm7|chr2 (153144312-153144864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-779, gnl|bosTau2|chr13 (42756790-42756243)
               

               
               226-779, gnl|Hg17|chr20 (30490246-30490783)
               

               
               226-779, gnl|Mm7|chr2 (153144312-153144864)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               thg (0.126791)

	226-779, gnl\|bosTau2\|chr13 (42756790-42756243)
	226-779, gnl\|Hg17\|chr20 (30490246-30490783)
	226-779, gnl\|Mm7\|chr2 (153144312-153144864)

	cga (0.279096)
	ecc (0.23007)
	fbs (0.175346)
	eye (0.170503)
	thg (0.126791)