Non-Coding RNA Search

Ss1.1-recc2825c_e7.5

Sequence:


               
               GATGCCGCGGGGGAGGGCCGACTGCGCAGTGCAGGCAGCTGTGTCAATCGTTTCCCCTCC
AGGGACTCGCCGGTGTCTGGGGACGGTGGGTTGTGCAGCTGCGCCGGGCCTACTGGGGCC
GCCGCCTGGGAGCCAGGAGGCGGGAGCTCGCGGTTCCCAGCGGTCTTTGACCGGTCTGGC
CGGTGCTGGCCCGGCGCAGGTAATGACGGCGGGAACCGGGAGGCCTGAGGCGCTGGGCGC
CCAATGGCCGCGGCCGGGAGCGATGTCGGCACGGCTCTTAAATGCGTCCTCTATGTCCCC
TTCGCCTTTCGTAGTTCTTTCTCCCTTGATCCGTCCGGAACCCGTTAAAAGGGACTCCTT
GTAGGGCGTGATGACGGTAGTGTGGTTAGGTTAAGGAGAGGGGAAAAAACGGAATACTAA
AGTTTTGACATAAAATGATCTGGTGTCTGGGATTTATTTTAAAATAACTCCTACAAAAAC
TGAGGAAGAGAGAATAAAACAAGCCCGGTGGGGTGTTTTTCATTGCCAATGCTGTGTTAT
ACACGACTCACTCCGGTGTCTCTACAGAGCTGTATGTCTGAAATTTTCCAAAATAAAAAA
AATTAATGAACGAGTGATTATCTCTGGGAAGGACAGCAAGGTTAGAGATGATGAGAGAGA
AGAGTATTTATTTTTCGCTATACACCATTTTGTGCTGTTCGAACTGGAGGTTTTTGGTGT
TTCACTGTATTACCTATTCGGAAAATTGGTAAATTTTAGGTTTGGTTCTCTCTCCTTCCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCCGCGGGGGAGGGCCGACTGCGCAGTGCAGGCAGCTGTGTCAATCGTTTCCCCTCC
AGGGACTCGCCGGTGTCTGGGGACGGTGGGTTGTGCAGCTGCGCCGGGCCTACTGGGGCC
GCCGCCTGGGAGCCAGGAGGCGGGAGCTCGCGGTTCCCAGCGGTCTTTGACCGGTCTGGC
CGGTGCTGGCCCGGCGCAGGTAATGACGGCGGGAACCGGGAGGCCTGAGGCGCTGGGCGC
CCAATGGCCGCGGCCGGGAGCGATGTCGGCACGGCTCTTAAATGCGTCCTCTATGTCCCC
TTCGCCTTTCGTAGTTCTTTCTCCCTTGATCCGTCCGGAACCCGTTAAAAGGGACTCCTT
GTAGGGCGTGATGACGGTAGTGTGGTTAGGTTAAGGAGAGGGGAAAAAACGGAATACTAA
AGTTTTGACATAAAATGATCTGGTGTCTGGGATTTATTTTAAAATAACTCCTACAAAAAC
TGAGGAAGAGAGAATAAAACAAGCCCGGTGGGGTGTTTTTCATTGCCAATGCTGTGTTAT
ACACGACTCACTCCGGTGTCTCTACAGAGCTGTATGTCTGAAATTTTCCAAAATAAAAAA
AATTAATGAACGAGTGATTATCTCTGGGAAGGACAGCAAGGTTAGAGATGATGAGAGAGA
AGAGTATTTATTTTTCGCTATACACCATTTTGTGCTGTTCGAACTGGAGGTTTTTGGTGT
TTCACTGTATTACCTATTCGGAAAATTGGTAAATTTTAGGTTTGGTTCTCTCTCCTTCCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-359, gnl|bosTau2|chr28 (31629459-31629827)
               

               
               3-359, gnl|echTel1|scaffold_307324 (6739-7147)
               

               
               3-359, gnl|hg17|chr10 (88271694-88272114)
               

               
               3-359, gnl|Hg17|chr10 (88271791-88272132)
               

               
               3-359, gnl|loxAfr1|scaffold_16169 (10067-9631)
               

               
               3-359, gnl|mm7|chr14 (32105422-32104990)
               

               
               3-359, gnl|Mm7|chr14 (32105306-32104969)
               

               
               3-359, gnl|monDom2|scaffold_41 (15145889-15146364)
               

               
               3-359, gnl|panTro1|chr8 (89895747-89896168)
               

               
               3-359, gnl|rn3|chr16 (10336893-10336456)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-359, gnl|bosTau2|chr28 (31629459-31629827)
               

               
               3-359, gnl|echTel1|scaffold_307324 (6739-7147)
               

               
               3-359, gnl|hg17|chr10 (88271694-88272114)
               

               
               3-359, gnl|Hg17|chr10 (88271791-88272132)
               

               
               3-359, gnl|loxAfr1|scaffold_16169 (10067-9631)
               

               
               3-359, gnl|mm7|chr14 (32105422-32104990)
               

               
               3-359, gnl|Mm7|chr14 (32105306-32104969)
               

               
               3-359, gnl|monDom2|scaffold_41 (15145889-15146364)
               

               
               3-359, gnl|panTro1|chr8 (89895747-89896168)
               

               
               3-359, gnl|rn3|chr16 (10336893-10336456)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	3-359, gnl\|bosTau2\|chr28 (31629459-31629827)
	3-359, gnl\|echTel1\|scaffold_307324 (6739-7147)
	3-359, gnl\|hg17\|chr10 (88271694-88272114)
	3-359, gnl\|Hg17\|chr10 (88271791-88272132)
	3-359, gnl\|loxAfr1\|scaffold_16169 (10067-9631)
	3-359, gnl\|mm7\|chr14 (32105422-32104990)
	3-359, gnl\|Mm7\|chr14 (32105306-32104969)
	3-359, gnl\|monDom2\|scaffold_41 (15145889-15146364)
	3-359, gnl\|panTro1\|chr8 (89895747-89896168)
	3-359, gnl\|rn3\|chr16 (10336893-10336456)