Non-Coding RNA Search

Ss1.1-recc2825c_h23.5

Sequence:


               
               GGCCCCGCCGCGGTCCAGCTCCCACGCTCGCGGCCCAGGCCGCAGGGTCCTGCCGCCGCT
GGCGCTCCACCGCTGAAATCGACGCTGCCGATGGTCGCCGAGGCCGGCCCCGCGGCCCTG
CCGCCCGAGGCCCGGGGCCCGGCCCATCCCCGTCAGCTCCTCAGCGCCGTCTGCTCTACG
GCTGCGCGGGCAGCGACTCAGAGTGCTCGGCCGGGCGCCTGGGGCCCCTCGGACGCCGGG
GCCCGACCGGCGGTGTCGGCGGCGGCTACGGGGAGAGTGAATCGAGCGCCAGCGAGGGGG
AGTCGCCTGCCTTCAGCTCCGCATCCAGCGACTCTGATGGCAGCGGTGGCCTCGTGTGGC
CGCAGCAGCTGGTGGCAGCCACCGCGGCCTCCGGGCCAGTGGGTGGTGCAGGTGGAGGGG
CGCCCGCGGGCCCCGCCAAAGTCTTTGTGAAGATCAAGGCTTCCCACGCGCTCAAGAAGA
AGATACTGCGTTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGTGTGAGTTTAGGGGT
GGGCTTGGGCTCCCCCTTCATGGCCTCTGCACCACCACACCCCCCAATCACTGATCCTTC
TACACCTCCCTTCCAAAGACCACCATGTTTCTCTGCTTCCAAAGACCCTTCCTCAAAGTC
CCATACAACTGCAGTCTGGGCTGAAAAGGCTCCCCCTCCACCACTGGGAGGAATGGGGGA
GGAGCCCTGTTTGACCCAGTGCACTGCCAGCCCTTGGGCAAGAAAGTCTGTACTGTGGGT
GTACTATGGTATGCAGAAGGGGTAATTCAGTTGGGATTTCCCCATTTTAGTTTAGACACT
TAGTCGGTTGGTCTACCTTCAGGTCTCTCGCTGAGCCCTCTTATTCCTCTTGGCCATCCC
CAGATATGTCACCCCTCCTCATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCCGCCGCGGTCCAGCTCCCACGCTCGCGGCCCAGGCCGCAGGGTCCTGCCGCCGCT
GGCGCTCCACCGCTGAAATCGACGCTGCCGATGGTCGCCGAGGCCGGCCCCGCGGCCCTG
CCGCCCGAGGCCCGGGGCCCGGCCCATCCCCGTCAGCTCCTCAGCGCCGTCTGCTCTACG
GCTGCGCGGGCAGCGACTCAGAGTGCTCGGCCGGGCGCCTGGGGCCCCTCGGACGCCGGG
GCCCGACCGGCGGTGTCGGCGGCGGCTACGGGGAGAGTGAATCGAGCGCCAGCGAGGGGG
AGTCGCCTGCCTTCAGCTCCGCATCCAGCGACTCTGATGGCAGCGGTGGCCTCGTGTGGC
CGCAGCAGCTGGTGGCAGCCACCGCGGCCTCCGGGCCAGTGGGTGGTGCAGGTGGAGGGG
CGCCCGCGGGCCCCGCCAAAGTCTTTGTGAAGATCAAGGCTTCCCACGCGCTCAAGAAGA
AGATACTGCGTTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGTGTGAGTTTAGGGGT
GGGCTTGGGCTCCCCCTTCATGGCCTCTGCACCACCACACCCCCCAATCACTGATCCTTC
TACACCTCCCTTCCAAAGACCACCATGTTTCTCTGCTTCCAAAGACCCTTCCTCAAAGTC
CCATACAACTGCAGTCTGGGCTGAAAAGGCTCCCCCTCCACCACTGGGAGGAATGGGGGA
GGAGCCCTGTTTGACCCAGTGCACTGCCAGCCCTTGGGCAAGAAAGTCTGTACTGTGGGT
GTACTATGGTATGCAGAAGGGGTAATTCAGTTGGGATTTCCCCATTTTAGTTTAGACACT
TAGTCGGTTGGTCTACCTTCAGGTCTCTCGCTGAGCCCTCTTATTCCTCTTGGCCATCCC
CAGATATGTCACCCCTCCTCATTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               303-462, - strand, RNAz p=0.824412
               

               
               503-779, - strand, RNAz p=0.999597

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-462, - strand, RNAz p=0.824412
               

               
               503-779, - strand, RNAz p=0.999597

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               679-742, + strand, RNAmicro p=0.996003

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               679-742, + strand, RNAmicro p=0.996003

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               67-779, gnl|bosTau2|chr18 (49775582-49776294)
               

               
               67-779, gnl|Hg17|chr19 (51844036-51843323)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-779, gnl|bosTau2|chr18 (49775582-49776294)
               

               
               67-779, gnl|Hg17|chr19 (51844036-51843323)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.240096)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               ecc (0.115035)

	303-462, - strand, RNAz p=0.824412
	503-779, - strand, RNAz p=0.999597

	67-779, gnl\|bosTau2\|chr18 (49775582-49776294)
	67-779, gnl\|Hg17\|chr19 (51844036-51843323)