Non-Coding RNA Search

Ss1.1-recc2825c_h4.5

Sequence:


               
               GCTCACGCCGCGGACCGAGGGGAACATGCTGTGGACCTTCTCTGCCATATAAGAAAGAGG
AAATATTTCAAACATGGCAGAAGCTAAGACTCACTGGCTTGGAGCATCCCTGTCTCTCAT
CCTTTTAATTTTCCTCCTTGCTACGGCTGAAGCAGCTTCATTTCAGAGAAACCAGCTGCT
TCAGAAGGAACCAGATCTCAGATTAGAAAATGTCCAAAGGTTTGCCAGTCCTGAAATGAT
CAGGGCTTTGGAGTATATAGAAAAGCTTCGGCAACAAGCTCACAAAGAAGAAAGCAGTCC
AGATTACAATCCCTACCAAGGTGTCTCTGTTCCCCTTCAGCAAAAAGAAAATAGTGACTT
GCCAGAAAGTTCAAGAGATTCCCTGAGTGAAGATGAGTGGATGAAGATAATACTTGAAGC
TTTGAGACAGGCTGAAAATGAGCCCCAGTCTTCGCTGAAAGAAAACAAGCCCTATACTTT
GAATTCAGAAAAGAACTTTCCAATGGACATGCCTGATGATTATGAGACTCAGCAGTGGCC
AGAAAGGAAGCTCAAGCACATGCGTTTCCCTCCTATGTATGAAGAGAATTCCAGAGACAA
CCCCTTTAAACGCACAAATGAAATCGTGGAGGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACGCCGCGGACCGAGGGGAACATGCTGTGGACCTTCTCTGCCATATAAGAAAGAGG
AAATATTTCAAACATGGCAGAAGCTAAGACTCACTGGCTTGGAGCATCCCTGTCTCTCAT
CCTTTTAATTTTCCTCCTTGCTACGGCTGAAGCAGCTTCATTTCAGAGAAACCAGCTGCT
TCAGAAGGAACCAGATCTCAGATTAGAAAATGTCCAAAGGTTTGCCAGTCCTGAAATGAT
CAGGGCTTTGGAGTATATAGAAAAGCTTCGGCAACAAGCTCACAAAGAAGAAAGCAGTCC
AGATTACAATCCCTACCAAGGTGTCTCTGTTCCCCTTCAGCAAAAAGAAAATAGTGACTT
GCCAGAAAGTTCAAGAGATTCCCTGAGTGAAGATGAGTGGATGAAGATAATACTTGAAGC
TTTGAGACAGGCTGAAAATGAGCCCCAGTCTTCGCTGAAAGAAAACAAGCCCTATACTTT
GAATTCAGAAAAGAACTTTCCAATGGACATGCCTGATGATTATGAGACTCAGCAGTGGCC
AGAAAGGAAGCTCAAGCACATGCGTTTCCCTCCTATGTATGAAGAGAATTCCAGAGACAA
CCCCTTTAAACGCACAAATGAAATCGTGGAGGAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|627706|pir||B61581

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|627706|pir||B61581

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-257, - strand, RNAz p=0.9939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-257, - strand, RNAz p=0.9939

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               58-636, gnl|bosTau2|chr2 (67905836-67905258)
               

               
               58-636, gnl|Hg17|chr2 (224289521-224288940)
               

               
               58-636, gnl|Mm7|chr1 (79657759-79657172)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-636, gnl|bosTau2|chr2 (67905836-67905258)
               

               
               58-636, gnl|Hg17|chr2 (224289521-224288940)
               

               
               58-636, gnl|Mm7|chr1 (79657759-79657172)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.473934)
               

               
               ebs (0.236602)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.473934)
               

               
               ebs (0.236602)
               

               
               ecc (0.115035)

	58-636, gnl\|bosTau2\|chr2 (67905836-67905258)
	58-636, gnl\|Hg17\|chr2 (224289521-224288940)
	58-636, gnl\|Mm7\|chr1 (79657759-79657172)