Non-Coding RNA Search

Ss1.1-recc2825c_i10.5

Sequence:


               
               AGACGAGCTGATTTTCATGCTGAGCGACAGCCCGGGGGTCATGTGCCGCCCTTCCCGAGT
CCGGCAGATGTTCGCCTCCAGAGCCTGCCGGAAGTCTGTGATGATCGGAACTGCCCTCAA
CACGAGTGAGATGAGGAGACTCGTCAGCCACATGGGGGAGATGGACCATCCCTGGAACTG
TCCCCACGGAAGGCCGACCATGAGACACATTGCCAACCTGGATGTCATTTCTCAAAACTG
ACACTTCTCCTTTTATGAACGCTTCATTGTACGGCAGATTTCTCTGTTTTGAAAGGCAGG
GTTTTAACCTTTTTTTTTTTTTTGGTTTATTTCTAAAAGAAGCCGTTGCTTAAAAATGTT
TCAGATCCATTTAGAAATGCTCTTGAGAACTTTTTCAAACAGTTCAGAGCATTGCTTGCG
ACACTTTCTGTTCCGCTCTTGAGCTTGGGTAAGTGTGTGGACAAGGAAGAGAACTTTTTT
GTTTTTTTTTTTTTTCTTGGCTTTTTGCTTTTCTCGAGGGCCGCTTCCCGCGGCATATGG
GGTTCCCAGGCTGGGGGTCTAATCAGAGCTGGAGTCACCGGCCTACGCCAGAGCCACAGC
AATGCGGGATCCGAGCCGAGTCTGCAACCTGCACCACAGCTCGCGGCAACGCCGAATCCT
TGACCCACTGAGCAAGGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTTGGATTTG
TTAACCACTGCGCCACGACGGGAACTCCAAGAAGGGAACATTTTAACAAATTGGGAGGAG
CAAGTGCTTCGGAAGTCACCCAGACCTCTGCTCTGGCCCCCCGGATTTTAGTCCCCAACT
TTCAGCCCTTGATGATTAAATTCATAGTGGTTTCGCTTTACACATTTCAAATGATGGTCC
ATTTGAATTAGTGGTTCTCAACCCTGATGCATAGTAAATTTAGAAAATAGGGAGTTGCCG
TTGTGGCTCAGTGGGTTAAGGACCTGACATTGTTTCTGGGCGGGGGTGGGGGAGGAATTC
AGGTTTGATCTCTGGCTTCCCGCAGTGGCTTAAGGATCCAGCATTGCTGCAAGCCACGGC
ACAGGTCACAGGTGCAGTTTGGGGTCGCTGTGGCATAGCCCAACCCCTAGCCCAGGAACG
TTCATATGCTGCAGCTGAAGCCATAAAAAGAAAAAACTGTTAAGCAGTCCAGCAAACTCA
AGCAGGATCCTCTGTCCAGCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGAGCTGATTTTCATGCTGAGCGACAGCCCGGGGGTCATGTGCCGCCCTTCCCGAGT
CCGGCAGATGTTCGCCTCCAGAGCCTGCCGGAAGTCTGTGATGATCGGAACTGCCCTCAA
CACGAGTGAGATGAGGAGACTCGTCAGCCACATGGGGGAGATGGACCATCCCTGGAACTG
TCCCCACGGAAGGCCGACCATGAGACACATTGCCAACCTGGATGTCATTTCTCAAAACTG
ACACTTCTCCTTTTATGAACGCTTCATTGTACGGCAGATTTCTCTGTTTTGAAAGGCAGG
GTTTTAACCTTTTTTTTTTTTTTGGTTTATTTCTAAAAGAAGCCGTTGCTTAAAAATGTT
TCAGATCCATTTAGAAATGCTCTTGAGAACTTTTTCAAACAGTTCAGAGCATTGCTTGCG
ACACTTTCTGTTCCGCTCTTGAGCTTGGGTAAGTGTGTGGACAAGGAAGAGAACTTTTTT
GTTTTTTTTTTTTTTCTTGGCTTTTTGCTTTTCTCGAGGGCCGCTTCCCGCGGCATATGG
GGTTCCCAGGCTGGGGGTCTAATCAGAGCTGGAGTCACCGGCCTACGCCAGAGCCACAGC
AATGCGGGATCCGAGCCGAGTCTGCAACCTGCACCACAGCTCGCGGCAACGCCGAATCCT
TGACCCACTGAGCAAGGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTTGGATTTG
TTAACCACTGCGCCACGACGGGAACTCCAAGAAGGGAACATTTTAACAAATTGGGAGGAG
CAAGTGCTTCGGAAGTCACCCAGACCTCTGCTCTGGCCCCCCGGATTTTAGTCCCCAACT
TTCAGCCCTTGATGATTAAATTCATAGTGGTTTCGCTTTACACATTTCAAATGATGGTCC
ATTTGAATTAGTGGTTCTCAACCCTGATGCATAGTAAATTTAGAAAATAGGGAGTTGCCG
TTGTGGCTCAGTGGGTTAAGGACCTGACATTGTTTCTGGGCGGGGGTGGGGGAGGAATTC
AGGTTTGATCTCTGGCTTCCCGCAGTGGCTTAAGGATCCAGCATTGCTGCAAGCCACGGC
ACAGGTCACAGGTGCAGTTTGGGGTCGCTGTGGCATAGCCCAACCCCTAGCCCAGGAACG
TTCATATGCTGCAGCTGAAGCCATAAAAAGAAAAAACTGTTAAGCAGTCCAGCAAACTCA
AGCAGGATCCTCTGTCCAGCTGGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               98-479, gnl|bosTau2|chr25 (35814872-35815259)
               

               
               98-479, gnl|Hg17|chr7 (5786414-5786034)
               


               
               787-947, gnl|bosTau2|chr25 (35815274-35815437)
               

               
               787-947, gnl|Hg17|chr7 (5785688-5785526)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-479, gnl|bosTau2|chr25 (35814872-35815259)
               

               
               98-479, gnl|Hg17|chr7 (5786414-5786034)
               


               
               787-947, gnl|bosTau2|chr25 (35815274-35815437)
               

               
               787-947, gnl|Hg17|chr7 (5785688-5785526)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ecc (0.115035)

	98-479, gnl\|bosTau2\|chr25 (35814872-35815259)
	98-479, gnl\|Hg17\|chr7 (5786414-5786034)

	787-947, gnl\|bosTau2\|chr25 (35815274-35815437)
	787-947, gnl\|Hg17\|chr7 (5785688-5785526)