Non-Coding RNA Search

Ss1.1-recc2825c_i16.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTGGCTTTAAAACGAGTGTGACGCCATATCAAGTCAATG
TTATTCTCTCACAGTGTACTCTCTAAGAGGTGTGGGTGTTCGGTCGGGATGTTAGCAGGT
GCTAAAGTAGCATGATCAGTGTACATGAAAGGTTTTTAGGAAGTATGGAAAAAAATGTTT
TGTTGGCTCTGATGGTGAAATGGTAAAGTCAGCCGCCTTTTAAGAGGCCCTATATGTTCA
GTGTTAAGTGACTTTTTTTAAAAATAATAACCTGTTTTTCTGACTAGCTTAAAGATGGAT
TTGAAAATGGTTTTGGATGCAATTAGGTTATGCTGTTTGGACAATAAACTCACCTTGACC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTGGCTTTAAAACGAGTGTGACGCCATATCAAGTCAATG
TTATTCTCTCACAGTGTACTCTCTAAGAGGTGTGGGTGTTCGGTCGGGATGTTAGCAGGT
GCTAAAGTAGCATGATCAGTGTACATGAAAGGTTTTTAGGAAGTATGGAAAAAAATGTTT
TGTTGGCTCTGATGGTGAAATGGTAAAGTCAGCCGCCTTTTAAGAGGCCCTATATGTTCA
GTGTTAAGTGACTTTTTTTAAAAATAATAACCTGTTTTTCTGACTAGCTTAAAGATGGAT
TTGAAAATGGTTTTGGATGCAATTAGGTTATGCTGTTTGGACAATAAACTCACCTTGACC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               90-369, gnl|bosTau2|chr12 (19179498-19179217)
               

               
               90-369, gnl|Hg17|chr12 (4284521-4284780)
               

               
               90-369, gnl|Mm7|chr6 (127149842-127149556)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-369, gnl|bosTau2|chr12 (19179498-19179217)
               

               
               90-369, gnl|Hg17|chr12 (4284521-4284780)
               

               
               90-369, gnl|Mm7|chr6 (127149842-127149556)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	90-369, gnl\|bosTau2\|chr12 (19179498-19179217)
	90-369, gnl\|Hg17\|chr12 (4284521-4284780)
	90-369, gnl\|Mm7\|chr6 (127149842-127149556)

	hlv (0.278513)
	ece (0.229305)
	eye (0.170503)
	ute (0.132784)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)