Non-Coding RNA Search

Ss1.1-recc2826c_d15.5

Sequence:


               
               AGTCACGACCCCCCTCCTCCTCCTTCCCCATCGGCCCTCGGAGGGGCTTCGGGGAGAGGC
TGCGTCGCCTGCGCCGCGTCCTCGCAGACCTCGGGGTCCTCGTCAGAGGAGGTCAGGGAG
CCTGCCTCACTGCTGTCGTCTTCCCCACAGACCGCTCGGGCATGGAGAATTCCGCTTCGG
TGGAGCAGCTCCAGGAGACGCTGCTGCGGGCTCTTCGGGCTCTGGTGCTGAAGAACCGGC
CCTCGGAGACTTCCCGCTTCACCAAGCTGCTGCTCAAGCTGCCGGACCTGCGGACCCTGA
ACAACATGCATTCCGAGAAGCTGCTGTCCTTCCGGGTGGACGCCCAGTGACCCGCCCGGC
CGGCCTTCTGCCGCTGCCCCCTTGTACAGAATCGAACTCTGCACTTCTCTCTCCTTTACG
AGACGAAAAGGAAAAGCAAACCAGAATCTTATTTATATTGTTATAAAATATTCCAAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCACGACCCCCCTCCTCCTCCTTCCCCATCGGCCCTCGGAGGGGCTTCGGGGAGAGGC
TGCGTCGCCTGCGCCGCGTCCTCGCAGACCTCGGGGTCCTCGTCAGAGGAGGTCAGGGAG
CCTGCCTCACTGCTGTCGTCTTCCCCACAGACCGCTCGGGCATGGAGAATTCCGCTTCGG
TGGAGCAGCTCCAGGAGACGCTGCTGCGGGCTCTTCGGGCTCTGGTGCTGAAGAACCGGC
CCTCGGAGACTTCCCGCTTCACCAAGCTGCTGCTCAAGCTGCCGGACCTGCGGACCCTGA
ACAACATGCATTCCGAGAAGCTGCTGTCCTTCCGGGTGGACGCCCAGTGACCCGCCCGGC
CGGCCTTCTGCCGCTGCCCCCTTGTACAGAATCGAACTCTGCACTTCTCTCTCCTTTACG
AGACGAAAAGGAAAAGCAAACCAGAATCTTATTTATATTGTTATAAAATATTCCAAGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4426899|gb|AAD20595.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4426899|gb|AAD20595.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               10-193, - strand, RNAz p=0.974622
               

               
               354-480, - strand, RNAz p=0.68718

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-193, - strand, RNAz p=0.974622
               

               
               354-480, - strand, RNAz p=0.68718

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003250, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003250, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-480, gnl|bosTau2|chr19 (34510032-34510517)
               

               
               10-480, gnl|Hg17|chr17 (35503194-35502732)
               

               
               10-480, gnl|Mm7|chr11 (98877600-98877129)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-480, gnl|bosTau2|chr19 (34510032-34510517)
               

               
               10-480, gnl|Hg17|chr17 (35503194-35502732)
               

               
               10-480, gnl|Mm7|chr11 (98877600-98877129)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csp (0.161186)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	10-193, - strand, RNAz p=0.974622
	354-480, - strand, RNAz p=0.68718

	10-480, gnl\|bosTau2\|chr19 (34510032-34510517)
	10-480, gnl\|Hg17\|chr17 (35503194-35502732)
	10-480, gnl\|Mm7\|chr11 (98877600-98877129)