Non-Coding RNA Search

Ss1.1-recc2826c_n21.5

Sequence:


               
               AAATGAAAGTGACATTTCACAACCCACGTGTGCGCCTTCTCTCTTTTGGTTTAAGGATGA
TCAGGTCTATCCAGGAAACAGCTCTGGCATCCTAAACTGAAATAATTAGGACGTATATAG
ACCTGACAAAAATGGAAAGGGGGTGGGGAATCTGAGGGTCTGTCTTGGCTAATTGATTCC
GCTAAACGGAATGCAGGAGATGTGAACGGCAGGACGCTCCGATTCCCACGCTCGGGGGCA
AGTGGTAAAGCGGGCCCGGCAGCCTATGACAGACAGCCCTGTTGGGGGGTGGGGGTATGA
AAAAAACATCAAGTGCACACACCATACTCATCTCCATCGCTTAAGAAAGTAGAGGCATTT
CCCACCCACAGCCATCTGCAGCCTCCCAAATGGCAGCACCAACTGGTCTGTAGCTGCTGC
ATACTGTCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGAAAGTGACATTTCACAACCCACGTGTGCGCCTTCTCTCTTTTGGTTTAAGGATGA
TCAGGTCTATCCAGGAAACAGCTCTGGCATCCTAAACTGAAATAATTAGGACGTATATAG
ACCTGACAAAAATGGAAAGGGGGTGGGGAATCTGAGGGTCTGTCTTGGCTAATTGATTCC
GCTAAACGGAATGCAGGAGATGTGAACGGCAGGACGCTCCGATTCCCACGCTCGGGGGCA
AGTGGTAAAGCGGGCCCGGCAGCCTATGACAGACAGCCCTGTTGGGGGGTGGGGGTATGA
AAAAAACATCAAGTGCACACACCATACTCATCTCCATCGCTTAAGAAAGTAGAGGCATTT
CCCACCCACAGCCATCTGCAGCCTCCCAAATGGCAGCACCAACTGGTCTGTAGCTGCTGC
ATACTGTCTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-274, + strand, RNAz p=0.949436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-274, + strand, RNAz p=0.949436

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               39-274, DA361798 BRSTN2 Homo sapiens cDNA clone BRSTN2008239 5', mRNA 
(dbj|DA361798.1|), blast E-value=0, identity=97.47% 
               

               
               39-274, DA517035 FEBRA2 Homo sapiens cDNA clone FEBRA2005678 5', mRNA 
(dbj|DA517035.1|), blast E-value=0, identity=97.47% 
               

               
               39-274, DKFZp686D2183_r1 686 (synonym (emb|AL711506.1|), blast E-value=0, 
identity=97.47% 
               

               
               39-274, 603178057F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb|BI916173.1|), 
blast E-value=0, identity=97.47% 
               

               
               39-274, hd73d12.g1 Canis Total Brain cDNAs Canis familiaris cDNA clone 
(gb|BQ290079.1|), blast E-value=0, identity=98.31% 
               

               
               39-274, LB02547.CR_E02 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344208.1|), 
blast E-value=0, identity=97.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               39-274, DA361798 BRSTN2 Homo sapiens cDNA clone BRSTN2008239 5', mRNA 
(dbj|DA361798.1|), blast E-value=0, identity=97.47% 
               

               
               39-274, DA517035 FEBRA2 Homo sapiens cDNA clone FEBRA2005678 5', mRNA 
(dbj|DA517035.1|), blast E-value=0, identity=97.47% 
               

               
               39-274, DKFZp686D2183_r1 686 (synonym (emb|AL711506.1|), blast E-value=0, 
identity=97.47% 
               

               
               39-274, 603178057F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb|BI916173.1|), 
blast E-value=0, identity=97.47% 
               

               
               39-274, hd73d12.g1 Canis Total Brain cDNAs Canis familiaris cDNA clone 
(gb|BQ290079.1|), blast E-value=0, identity=98.31% 
               

               
               39-274, LB02547.CR_E02 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344208.1|), 
blast E-value=0, identity=97.47%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-432, gnl|bosTau2|chr7 (56648207-56648643)
               

               
               1-432, gnl|Hg17|chr5 (87997701-87997267)
               

               
               1-432, gnl|Mm7|chr13 (80809836-80810270)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr7 (56648207-56648643)
               

               
               1-432, gnl|Hg17|chr5 (87997701-87997267)
               

               
               1-432, gnl|Mm7|chr13 (80809836-80810270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.345105)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)

	39-274, DA361798 BRSTN2 Homo sapiens cDNA clone BRSTN2008239 5', mRNA (dbj\|DA361798.1\|), blast E-value=0, identity=97.47%
	39-274, DA517035 FEBRA2 Homo sapiens cDNA clone FEBRA2005678 5', mRNA (dbj\|DA517035.1\|), blast E-value=0, identity=97.47%
	39-274, DKFZp686D2183_r1 686 (synonym (emb\|AL711506.1\|), blast E-value=0, identity=97.47%
	39-274, 603178057F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb\|BI916173.1\|), blast E-value=0, identity=97.47%
	39-274, hd73d12.g1 Canis Total Brain cDNAs Canis familiaris cDNA clone (gb\|BQ290079.1\|), blast E-value=0, identity=98.31%
	39-274, LB02547.CR_E02 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE344208.1\|), blast E-value=0, identity=97.47%

	1-432, gnl\|bosTau2\|chr7 (56648207-56648643)
	1-432, gnl\|Hg17\|chr5 (87997701-87997267)
	1-432, gnl\|Mm7\|chr13 (80809836-80810270)