Non-Coding RNA Search

Ss1.1-recc2827c_m7.5

Sequence:


               
               CTCCAAGAAGGCGGCGGCGGCAGCTTGCACAGCCATGGCCAAGATTAAGGCTCGAGACCT
TCGGGGCAAGAAGAAGGAGGAGCTGCTGAAACAACTGGAGGACCTGAAGGTGGAGCTGTC
CCAACTGCGCGTCGCGAAAGTGACAGGCGGGGCGGCTTCCAAACTCTCCAAGATCCGAGT
TGTTCGCAAATCCATTGCCCGCGTTCTCACCGTCATCAACCAGACCCAGAAAGAGAACCT
CAGGAAATTCTATAAGGGCAAGAAGTACAAGCCTCTGGATCTACGGCCCAAGAAAACACG
TGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCG
GAAGGAGCGGTTGTACCCACTCCGGAAGTTCGCCGTCAAGGCCTGAGCATCCAGGGAGCA
ATAAAAGAAACAAACTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGCGCGGCCTTTACTGTGTATGGTTACCTGGTGTTTGCTGGATTCCAG
CAGGCTAGCTGCTGTCGGCTGCCCTGGTGTGGGGCTGTGGCAGTCCTGGCCACAGGGATC
TGAGCCATACGTGTGATGTTATCTTTGGGCAGCTCTGGGTGATTTGCAGTGGACTTGGCA
TCTTGCCTGATCAGCAGTTCCAGACACTAAGAGCTTCCCATCTGGGGTAAAGGCGCAGCT
GTGGGCCACATCCAGGACTCCCTGCCAAAAGCATGGTGTCGGGCTCTGGGGGTGCAGGCC
ACCCCTGGCAGGCCTTCACTACACCCTCGTTTGCTCCAGCCACAGCCCTTACCTTCAGGG
TATCAGTGCACCTTCCTGTGTTGCAGTCCCAGACTTTGACCTGGAAACAAGTGGAAAGGT
AGGAAGGTCTCGCAGACGTGTCTGGATCTTTGAGAAAAATCATCTTTGGGGTGAGTCGTT
GCCAACATCTAAACTGCTTGGTCTGGATTTTGTTGTCTGTGAGGTGTATTTAACATAATA
TCTGATAGAAAAATTTCTTCCCCTGAATGAGTCATAAAATGTCAGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAAGAAGGCGGCGGCGGCAGCTTGCACAGCCATGGCCAAGATTAAGGCTCGAGACCT
TCGGGGCAAGAAGAAGGAGGAGCTGCTGAAACAACTGGAGGACCTGAAGGTGGAGCTGTC
CCAACTGCGCGTCGCGAAAGTGACAGGCGGGGCGGCTTCCAAACTCTCCAAGATCCGAGT
TGTTCGCAAATCCATTGCCCGCGTTCTCACCGTCATCAACCAGACCCAGAAAGAGAACCT
CAGGAAATTCTATAAGGGCAAGAAGTACAAGCCTCTGGATCTACGGCCCAAGAAAACACG
TGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCG
GAAGGAGCGGTTGTACCCACTCCGGAAGTTCGCCGTCAAGGCCTGAGCATCCAGGGAGCA
ATAAAAGAAACAAACTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGCGCGGCCTTTACTGTGTATGGTTACCTGGTGTTTGCTGGATTCCAG
CAGGCTAGCTGCTGTCGGCTGCCCTGGTGTGGGGCTGTGGCAGTCCTGGCCACAGGGATC
TGAGCCATACGTGTGATGTTATCTTTGGGCAGCTCTGGGTGATTTGCAGTGGACTTGGCA
TCTTGCCTGATCAGCAGTTCCAGACACTAAGAGCTTCCCATCTGGGGTAAAGGCGCAGCT
GTGGGCCACATCCAGGACTCCCTGCCAAAAGCATGGTGTCGGGCTCTGGGGGTGCAGGCC
ACCCCTGGCAGGCCTTCACTACACCCTCGTTTGCTCCAGCCACAGCCCTTACCTTCAGGG
TATCAGTGCACCTTCCTGTGTTGCAGTCCCAGACTTTGACCTGGAAACAAGTGGAAAGGT
AGGAAGGTCTCGCAGACGTGTCTGGATCTTTGAGAAAAATCATCTTTGGGGTGAGTCGTT
GCCAACATCTAAACTGCTTGGTCTGGATTTTGTTGTCTGTGAGGTGTATTTAACATAATA
TCTGATAGAAAAATTTCTTCCCCTGAATGAGTCATAAAATGTCAGTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               RL35_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RL35_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-460, gnl|bosTau2|chr10 (8475897-8476356)
               

               
               1-460, gnl|Hg17|chr8 (18676745-18676298)
               

               
               1-460, gnl|Mm7|chr4 (51203916-51204334)
               


               
               613-938, gnl|bosTau2|chr11 (73160286-73159962)
               

               
               613-938, gnl|Hg17|chr9 (124699470-124699113)
               

               
               613-938, gnl|Mm7|chr2 (39008710-39008447)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-460, gnl|bosTau2|chr10 (8475897-8476356)
               

               
               1-460, gnl|Hg17|chr8 (18676745-18676298)
               

               
               1-460, gnl|Mm7|chr4 (51203916-51204334)
               


               
               613-938, gnl|bosTau2|chr11 (73160286-73159962)
               

               
               613-938, gnl|Hg17|chr9 (124699470-124699113)
               

               
               613-938, gnl|Mm7|chr2 (39008710-39008447)

Expressed library(ies): 58 entry(ies)

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Expressed library(ies): 58 entry(ies)

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               eje (4.74402)
               

               
               cag (4.23344)
               

               
               lnt (3.27309)
               

               
               ecc (2.87588)
               

               
               elu (2.6975)
               

               
               nlu (2.68353)
               

               
               ese (2.65655)
               

               
               duo (2.59202)
               

               
               fcc (2.5712)
               

               
               fty (2.46175)
               

               
               csp (2.41779)
               

               
               mcp (2.38908)
               

               
               ebs (2.36602)
               

               
               ece (2.29305)
               

               
               ill (2.2827)
               

               
               cga (2.23277)
               

               
               fli (2.23169)
               

               
               hyp (2.14255)
               

               
               eru (2.04082)
               

               
               nep (2.02317)
               

               
               pty (1.998)
               

               
               nje (1.99104)
               

               
               med (1.97628)
               

               
               hlv (1.94959)
               

               
               nca (1.91623)
               

               
               cly (1.80963)
               

               
               eep (1.7159)
               

               
               jca (1.7094)
               

               
               cov (1.58583)
               

               
               col (1.36505)
               

               
               nbm (1.29122)
               

               
               amn (1.25313)
               

               
               ton (1.2285)
               

               
               fbs (1.22742)
               

               
               ute (1.19506)
               

               
               cli (1.06968)
               

               
               nmm (1.06242)
               

               
               mas (1.05152)
               

               
               fhi (1.01747)
               

               
               jej (0.989218)
               

               
               nco (0.970403)
               

               
               nms (0.855432)
               

               
               eye (0.852515)
               

               
               fce (0.814775)
               

               
               eli (0.607257)
               

               
               che (0.408942)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (4.74402)
               

               
               cag (4.23344)
               

               
               lnt (3.27309)
               

               
               ecc (2.87588)
               

               
               elu (2.6975)
               

               
               nlu (2.68353)
               

               
               ese (2.65655)
               

               
               duo (2.59202)
               

               
               fcc (2.5712)
               

               
               fty (2.46175)
               

               
               csp (2.41779)
               

               
               mcp (2.38908)
               

               
               ebs (2.36602)
               

               
               ece (2.29305)
               

               
               ill (2.2827)
               

               
               cga (2.23277)
               

               
               fli (2.23169)
               

               
               hyp (2.14255)
               

               
               eru (2.04082)
               

               
               nep (2.02317)
               

               
               pty (1.998)
               

               
               nje (1.99104)
               

               
               med (1.97628)
               

               
               hlv (1.94959)
               

               
               nca (1.91623)
               

               
               cly (1.80963)
               

               
               eep (1.7159)
               

               
               jca (1.7094)
               

               
               cov (1.58583)
               

               
               col (1.36505)
               

               
               nbm (1.29122)
               

               
               amn (1.25313)
               

               
               ton (1.2285)
               

               
               fbs (1.22742)
               

               
               ute (1.19506)
               

               
               cli (1.06968)
               

               
               nmm (1.06242)
               

               
               mas (1.05152)
               

               
               fhi (1.01747)
               

               
               jej (0.989218)
               

               
               nco (0.970403)
               

               
               nms (0.855432)
               

               
               eye (0.852515)
               

               
               fce (0.814775)
               

               
               eli (0.607257)
               

               
               che (0.408942)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	1-460, gnl\|bosTau2\|chr10 (8475897-8476356)
	1-460, gnl\|Hg17\|chr8 (18676745-18676298)
	1-460, gnl\|Mm7\|chr4 (51203916-51204334)

	613-938, gnl\|bosTau2\|chr11 (73160286-73159962)
	613-938, gnl\|Hg17\|chr9 (124699470-124699113)
	613-938, gnl\|Mm7\|chr2 (39008710-39008447)

	eje (4.74402)
	cag (4.23344)
	lnt (3.27309)
	ecc (2.87588)
	elu (2.6975)
	nlu (2.68353)
	ese (2.65655)
	duo (2.59202)
	fcc (2.5712)
	fty (2.46175)
	csp (2.41779)
	mcp (2.38908)
	ebs (2.36602)
	ece (2.29305)
	ill (2.2827)
	cga (2.23277)
	fli (2.23169)
	hyp (2.14255)
	eru (2.04082)
	nep (2.02317)
	pty (1.998)
	nje (1.99104)
	med (1.97628)
	hlv (1.94959)
	nca (1.91623)
	cly (1.80963)
	eep (1.7159)
	jca (1.7094)
	cov (1.58583)
	col (1.36505)
	nbm (1.29122)
	amn (1.25313)
	ton (1.2285)
	fbs (1.22742)
	ute (1.19506)
	cli (1.06968)
	nmm (1.06242)
	mas (1.05152)
	fhi (1.01747)
	jej (0.989218)
	nco (0.970403)
	nms (0.855432)
	eye (0.852515)
	fce (0.814775)
	eli (0.607257)
	che (0.408942)
	aor (0.195274)
	sag (0.182715)
	rec (0.17307)
	cut (0.169924)
	cki (0.165235)
	fat (0.147427)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	clu (0.119646)