Ss1.1-recc2828c_h8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATGAGAATCCCGCCTGTGTTGTTGTCGACTCTTCCGTTGTTGTTGTTGGGGTTGAAAC GACGCGACGAAATGCCGGAGCGAGACAGCGAGCCGTTCTCTAACCCGTTGGCCCCAGACG GCCATGATGTGGACGATCCTCACTCCTTCCACCAATCAAAACTCACTAATGAAGACTTCA GAAAACTTCTCATGACCCCAAGGGCTGCCCCTACCTCTGCACCGCCCTCTAAGTCACGTC ACCATGAAATGCCACGGGAGTACAACGAGGATGAAGATCCAGCTGCACGGAGGAGAAAAA AGAAAAGTTACTACGCCAAGCTTCGCCAACAAGAAATAGAGAGAGAGAGAGAGCTGGCAG AGAAGTACCGGGACCGAGCCAAGGAACGGCGGGACGGCGTGAACAAGGACTATGAGGAAA CCGAGCTCATCAGCACCACGGCCAACTACAGGGCAGTGGGCCCCACCGCCGAGGCGGACA AATCCGCCGCGGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGACA TGGAACACACCCATTTGGTGAAAGGCTTGGACTTCGCTCTGCTTCAAAAGGTACGAGCTG AAATTGCCAGCAAAGAAAAAGAAGAGGAAGAACTGATGGAAAAGCCCCAGAAAGAAACCA AGAAAGATGAAGATCTTGAAAATAAAATTGAATTTAAAACACGTTTGGGCCGGAATGTTT ACCGAATGATCTTCAAGAGCAAAGCGTATGAGCGGAACGAGATATTCCTTCCGGGCCGCA TGGCTTACGTGGTGGATATGGATGATGAGTACGCCGACACAGACATCCCCACGACCTTTA TCCGCAGCAAAGCTGATTGCCTTACCATGGAGGCCCAGACCACACTGACCACAAATGACA TTGTCATCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATGAGAATCCCGCCTGTGTTGTTGTCGACTCTTCCGTTGTTGTTGTTGGGGTTGAAAC GACGCGACGAAATGCCGGAGCGAGACAGCGAGCCGTTCTCTAACCCGTTGGCCCCAGACG GCCATGATGTGGACGATCCTCACTCCTTCCACCAATCAAAACTCACTAATGAAGACTTCA GAAAACTTCTCATGACCCCAAGGGCTGCCCCTACCTCTGCACCGCCCTCTAAGTCACGTC ACCATGAAATGCCACGGGAGTACAACGAGGATGAAGATCCAGCTGCACGGAGGAGAAAAA AGAAAAGTTACTACGCCAAGCTTCGCCAACAAGAAATAGAGAGAGAGAGAGAGCTGGCAG AGAAGTACCGGGACCGAGCCAAGGAACGGCGGGACGGCGTGAACAAGGACTATGAGGAAA CCGAGCTCATCAGCACCACGGCCAACTACAGGGCAGTGGGCCCCACCGCCGAGGCGGACA AATCCGCCGCGGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGACA TGGAACACACCCATTTGGTGAAAGGCTTGGACTTCGCTCTGCTTCAAAAGGTACGAGCTG AAATTGCCAGCAAAGAAAAAGAAGAGGAAGAACTGATGGAAAAGCCCCAGAAAGAAACCA AGAAAGATGAAGATCTTGAAAATAAAATTGAATTTAAAACACGTTTGGGCCGGAATGTTT ACCGAATGATCTTCAAGAGCAAAGCGTATGAGCGGAACGAGATATTCCTTCCGGGCCGCA TGGCTTACGTGGTGGATATGGATGATGAGTACGCCGACACAGACATCCCCACGACCTTTA TCCGCAGCAAAGCTGATTGCCTTACCATGGAGGCCCAGACCACACTGACCACAAATGACA TTGTCATCAGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 306-476, gnl|bosTau2|chr7 (30519354-30519184) | |
| 306-476, gnl|canFam2|chr2 (38659406-38659537) | |
| 306-476, gnl|danRer3|chrNA (32369274-32369405) | |
| 306-476, gnl|dasNov1|scaffold_20296 (12194-12325) | |
| 306-476, gnl|echTel1|scaffold_292061 (125789-125658) | |
| 306-476, gnl|fr1|chrUn (138475589-138475458) | |
| 306-476, gnl|galGal2|chr13 (258253-258122) | |
| 306-476, gnl|hg17|chr5 (140012744-140012875) | |
| 306-476, gnl|Hg17|chr5 (140012744-140012914) | |
| 306-476, gnl|loxAfr1|scaffold_70635 (4271-4141) | |
| 306-476, gnl|mm7|chr18 (37124750-37124881) | |
| 306-476, gnl|Mm7|chr18 (37124750-37124920) | |
| 306-476, gnl|monDom2|scaffold_6 (68150970-68150839) | |
| 306-476, gnl|oryCun1|scaffold_212741 (427-558) | |
| 306-476, gnl|panTro1|chr4 (146631142-146631273) | |
| 306-476, gnl|rheMac2|chr6 (137054021-137054152) | |
| 306-476, gnl|rn3|chr18 (29474848-29474979) | |
| 306-476, gnl|tetNig1|chrUn_random (103676016-103675885) | |
| 306-476, gnl|xenTro1|scaffold_648 (57661-57791) | |
| 708-873, gnl|bosTau2|chr7 (30517106-30516941) | |
| 708-873, gnl|canFam2|chr2 (38661969-38661806) | |
| 708-873, gnl|danRer3|chrNA (32373291-32373128) | |
| 708-873, gnl|dasNov1|scaffold_196234 (1399-1562) | |
| 708-873, gnl|echTel1|scaffold_292061 (123129-123290) | |
| 708-873, gnl|fr1|chrUn (138474314-138474477) | |
| 708-873, gnl|galGal2|chr13 (257026-257189) | |
| 708-873, gnl|hg17|chr2 (58599975-58600137) | |
| 708-873, gnl|Hg17|chr5 (140015597-140015762) | |
| 708-873, gnl|loxAfr1|scaffold_51954 (4132-3967) | |
| 708-873, gnl|Mm7|chr18 (37127304-37127469) | |
| 708-873, gnl|mm7|chr19 (36105972-36105823) | |
| 708-873, gnl|monDom2|scaffold_6 (68148609-68148772) | |
| 708-873, gnl|oryCun1|scaffold_208242 (242424-242264) | |
| 708-873, gnl|panTro1|chr12 (60732972-60733134) | |
| 708-873, gnl|rheMac2|chr6 (137057026-137056863) | |
| 708-873, gnl|rn3|chr18 (29479267-29479104) | |
| 708-873, gnl|tetNig1|chrUn_random (103675089-103675252) | |
| 708-873, gnl|xenTro1|scaffold_648 (65898-65735) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 306-476, gnl|bosTau2|chr7 (30519354-30519184) | |
| 306-476, gnl|canFam2|chr2 (38659406-38659537) | |
| 306-476, gnl|danRer3|chrNA (32369274-32369405) | |
| 306-476, gnl|dasNov1|scaffold_20296 (12194-12325) | |
| 306-476, gnl|echTel1|scaffold_292061 (125789-125658) | |
| 306-476, gnl|fr1|chrUn (138475589-138475458) | |
| 306-476, gnl|galGal2|chr13 (258253-258122) | |
| 306-476, gnl|hg17|chr5 (140012744-140012875) | |
| 306-476, gnl|Hg17|chr5 (140012744-140012914) | |
| 306-476, gnl|loxAfr1|scaffold_70635 (4271-4141) | |
| 306-476, gnl|mm7|chr18 (37124750-37124881) | |
| 306-476, gnl|Mm7|chr18 (37124750-37124920) | |
| 306-476, gnl|monDom2|scaffold_6 (68150970-68150839) | |
| 306-476, gnl|oryCun1|scaffold_212741 (427-558) | |
| 306-476, gnl|panTro1|chr4 (146631142-146631273) | |
| 306-476, gnl|rheMac2|chr6 (137054021-137054152) | |
| 306-476, gnl|rn3|chr18 (29474848-29474979) | |
| 306-476, gnl|tetNig1|chrUn_random (103676016-103675885) | |
| 306-476, gnl|xenTro1|scaffold_648 (57661-57791) | |
| 708-873, gnl|bosTau2|chr7 (30517106-30516941) | |
| 708-873, gnl|canFam2|chr2 (38661969-38661806) | |
| 708-873, gnl|danRer3|chrNA (32373291-32373128) | |
| 708-873, gnl|dasNov1|scaffold_196234 (1399-1562) | |
| 708-873, gnl|echTel1|scaffold_292061 (123129-123290) | |
| 708-873, gnl|fr1|chrUn (138474314-138474477) | |
| 708-873, gnl|galGal2|chr13 (257026-257189) | |
| 708-873, gnl|hg17|chr2 (58599975-58600137) | |
| 708-873, gnl|Hg17|chr5 (140015597-140015762) | |
| 708-873, gnl|loxAfr1|scaffold_51954 (4132-3967) | |
| 708-873, gnl|Mm7|chr18 (37127304-37127469) | |
| 708-873, gnl|mm7|chr19 (36105972-36105823) | |
| 708-873, gnl|monDom2|scaffold_6 (68148609-68148772) | |
| 708-873, gnl|oryCun1|scaffold_208242 (242424-242264) | |
| 708-873, gnl|panTro1|chr12 (60732972-60733134) | |
| 708-873, gnl|rheMac2|chr6 (137057026-137056863) | |
| 708-873, gnl|rn3|chr18 (29479267-29479104) | |
| 708-873, gnl|tetNig1|chrUn_random (103675089-103675252) | |
| 708-873, gnl|xenTro1|scaffold_648 (65898-65735) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cki (0.330469) | |
| spl (0.143184) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| spl (0.143184) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| ldo (0.0970026) |