Non-Coding RNA Search

Ss1.1-recc2828c_i13.5

Sequence:


               
               CAGCCATCACCCGCTTCTGCCATTCAATGGAGGACGGTCTGCTGGAGATCATGACCAAGG
ACGGCGGAGACATGCCCGCACCTCTGGAGGTGTCCACCGTGCCGGCGGTGGGGGACGTGA
TCTCCGGGGAGTACAACGGCGGCATGAAGGAACTGATGGAGCACCTGAAAGCCCAGCTGC
AGGCCCTGTTTGAGGACGTGAGGGCCATGCGGGGGGCCCTGGACGAGCAGGCCTCGCACA
TCCAGGTGCTCTCGGACGACGTGTGCGCCAACCAGCGAGCCATCGTCTCCATGTGCCGGA
TTATGACCACCGCGCCCCGCCAGGGTGGCCTGGGCGTGGTCGGCGGCAAGGGGAGCTTCC
CCGGCGCCCCCCAAGAGCGGGAGACCCCTTCGCTTGGGATCGGGGACAGCGGTTTGCTGG
GTCGCGATCCTGAAGACGAGGAGGACGACGATGAAGAGGAGAAGGAGATGCCCAGCTCCG
CCACACCCACTAGTCACTGTGAGCGCCCCGAGAGCCCCTGTGCTGGCCACCTTGGGGGGG
ACGGGCCACTTGTGGAGCCCCTCGATCTGCCCGACATTACCCTGCTGCAGCTGGAGGCCG
AGGCCTCTCTGTGAGGGGACTCCGAGGGGGCTCTATTTTCCCGGACTGGCTTTGGGTTTC
CGAGTGCATGACGTGAGGGGACTGAACGGCGCGGTGCAACATGCTTCACGCTGCTCTTGT
TGGTCAAGCAGAAGAGACTCCCTCGAGGAAGGATTTATAGGGTAAAGGACTTTGGGAGCA
TCAAGAATTCTTTCTGCCCAACCAAGCGAGATGCAGCAAACTGCGGAAAGGTGAGATTCC
GGGAGAGGAAGCGCCCATCTCTGGACTCCCATCCAATCCCCTACCCTGCCCTTTTCCCCT
CCCCAGCCAACAGGAGAACCCCTGAACTGTGTAAATAAAATTCTGCTTTTCTATTCTGAA
AAAGGACTTATCTAGGACTATGGCAAATAATCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCATCACCCGCTTCTGCCATTCAATGGAGGACGGTCTGCTGGAGATCATGACCAAGG
ACGGCGGAGACATGCCCGCACCTCTGGAGGTGTCCACCGTGCCGGCGGTGGGGGACGTGA
TCTCCGGGGAGTACAACGGCGGCATGAAGGAACTGATGGAGCACCTGAAAGCCCAGCTGC
AGGCCCTGTTTGAGGACGTGAGGGCCATGCGGGGGGCCCTGGACGAGCAGGCCTCGCACA
TCCAGGTGCTCTCGGACGACGTGTGCGCCAACCAGCGAGCCATCGTCTCCATGTGCCGGA
TTATGACCACCGCGCCCCGCCAGGGTGGCCTGGGCGTGGTCGGCGGCAAGGGGAGCTTCC
CCGGCGCCCCCCAAGAGCGGGAGACCCCTTCGCTTGGGATCGGGGACAGCGGTTTGCTGG
GTCGCGATCCTGAAGACGAGGAGGACGACGATGAAGAGGAGAAGGAGATGCCCAGCTCCG
CCACACCCACTAGTCACTGTGAGCGCCCCGAGAGCCCCTGTGCTGGCCACCTTGGGGGGG
ACGGGCCACTTGTGGAGCCCCTCGATCTGCCCGACATTACCCTGCTGCAGCTGGAGGCCG
AGGCCTCTCTGTGAGGGGACTCCGAGGGGGCTCTATTTTCCCGGACTGGCTTTGGGTTTC
CGAGTGCATGACGTGAGGGGACTGAACGGCGCGGTGCAACATGCTTCACGCTGCTCTTGT
TGGTCAAGCAGAAGAGACTCCCTCGAGGAAGGATTTATAGGGTAAAGGACTTTGGGAGCA
TCAAGAATTCTTTCTGCCCAACCAAGCGAGATGCAGCAAACTGCGGAAAGGTGAGATTCC
GGGAGAGGAAGCGCCCATCTCTGGACTCCCATCCAATCCCCTACCCTGCCCTTTTCCCCT
CCCCAGCCAACAGGAGAACCCCTGAACTGTGTAAATAAAATTCTGCTTTTCTATTCTGAA
AAAGGACTTATCTAGGACTATGGCAAATAATCTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q52MB2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52MB2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               713-831, - strand, RNAz p=0.817629
               

               
               872-988, - strand, RNAz p=0.55184

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               713-831, - strand, RNAz p=0.817629
               

               
               872-988, - strand, RNAz p=0.55184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-996, gnl|bosTau2|chr5 (25698344-25699340)
               

               
               3-996, gnl|Hg17|chr12 (46864149-46865146)
               

               
               3-996, gnl|Mm7|chr15 (98171475-98172459)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-996, gnl|bosTau2|chr5 (25698344-25699340)
               

               
               3-996, gnl|Hg17|chr12 (46864149-46865146)
               

               
               3-996, gnl|Mm7|chr15 (98171475-98172459)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.354904)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               ecc (0.115035)

	713-831, - strand, RNAz p=0.817629
	872-988, - strand, RNAz p=0.55184

	3-996, gnl\|bosTau2\|chr5 (25698344-25699340)
	3-996, gnl\|Hg17\|chr12 (46864149-46865146)
	3-996, gnl\|Mm7\|chr15 (98171475-98172459)