Ss1.1-recc2828c_p14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCAATGATGTGGCGTCGATGGCCGGAGTGAACCTGTCGGAAGAAAGTGCCAGGATATT AGCCACGAACTCTGAGCTGGTGGGCACGCTGACGCGGTCCTGCAAGGACGAGACCTTCCT CCTCCCAGCGCCTTTACAGAGACGGATATTAGAGATAGGTAAAAAGCACGGCATCACAGA GCTGCACCCCGACGTGGTGGGCTACGTGTCACACGCCACGCAGCAGAGGCTGCAGAACCT CGTGGAGAAGATCTCAGAAACGGCTCAGCAGAAGAACTTCTCTTACAAGGACGATGACAG ATACGAGCAGGCAAGTGACGTCCGGGCTCAGCTCAAGTTCTTTGAGCAGCTCGATCAGAT TGAAAAGCAGAGGAAAGACGAGCAGGAGAGAGAGATCTTGATGCGGGCGGCAAAGTCTCG ATCCAGACAAGAAGATCCGGAACAGTTAAGATTGAAACAGAAGGCAAAGGAGATGCAGCA ACAAGAACTGGCACAGATGAGGCAGCGAGATGCCAACCTCACAGCCCTGGCCGCCATCGG GCCCAGGAAAAAGAGGAAGGTGGACTCTCCGGGACCGGGATCCGGAGCAGAGGGCGCGGG CCCGGGCTCGGCGGTCCCAGGCAGCTCCGGCGTCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCAATGATGTGGCGTCGATGGCCGGAGTGAACCTGTCGGAAGAAAGTGCCAGGATATT AGCCACGAACTCTGAGCTGGTGGGCACGCTGACGCGGTCCTGCAAGGACGAGACCTTCCT CCTCCCAGCGCCTTTACAGAGACGGATATTAGAGATAGGTAAAAAGCACGGCATCACAGA GCTGCACCCCGACGTGGTGGGCTACGTGTCACACGCCACGCAGCAGAGGCTGCAGAACCT CGTGGAGAAGATCTCAGAAACGGCTCAGCAGAAGAACTTCTCTTACAAGGACGATGACAG ATACGAGCAGGCAAGTGACGTCCGGGCTCAGCTCAAGTTCTTTGAGCAGCTCGATCAGAT TGAAAAGCAGAGGAAAGACGAGCAGGAGAGAGAGATCTTGATGCGGGCGGCAAAGTCTCG ATCCAGACAAGAAGATCCGGAACAGTTAAGATTGAAACAGAAGGCAAAGGAGATGCAGCA ACAAGAACTGGCACAGATGAGGCAGCGAGATGCCAACCTCACAGCCCTGGCCGCCATCGG GCCCAGGAAAAAGAGGAAGGTGGACTCTCCGGGACCGGGATCCGGAGCAGAGGGCGCGGG CCCGGGCTCGGCGGTCCCAGGCAGCTCCGGCGTCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-161, gnl|bosTau2|chr13 (36276556-36276716) | |
| 1-161, gnl|Hg17|chr20 (60009160-60009000) | |
| 1-161, gnl|Mm7|chr2 (180425487-180425327) | |
| 288-415, gnl|bosTau2|chr13 (36277967-36278094) | |
| 288-415, gnl|Hg17|chr20 (60007561-60007434) | |
| 288-415, gnl|Mm7|chr2 (180423994-180423867) | |
| 471-593, gnl|bosTau2|chr13 (36279391-36279513) | |
| 471-593, gnl|canFam2|chr24 (49139687-49139837) | |
| 471-593, gnl|canFam2|chr7 (65339410-65339306) | |
| 471-593, gnl|danRer3|chr25 (8692495-8692353) | |
| 471-593, gnl|dasNov1|scaffold_4170 (106749-106645) | |
| 471-593, gnl|dasNov1|scaffold_5741 (52205-52075) | |
| 471-593, gnl|echTel1|scaffold_184852 (10714-10570) | |
| 471-593, gnl|echTel1|scaffold_184852 (10585-10668) | |
| 471-593, gnl|fr1|chrUn (148022197-148022346) | |
| 471-593, gnl|fr1|chrUn (57696349-57696182) | |
| 471-593, gnl|galGal2|chr20 (7407190-7407333) | |
| 471-593, gnl|hg17|chr20 (60005990-60006139) | |
| 471-593, gnl|Hg17|chr20 (60006122-60006000) | |
| 471-593, gnl|hg17|chr4 (114106094-114106198) | |
| 471-593, gnl|loxAfr1|scaffold_73336 (6984-6837) | |
| 471-593, gnl|loxAfr1|scaffold_73336 (6851-6935) | |
| 471-593, gnl|mm7|chr2 (180422052-180422202) | |
| 471-593, gnl|mm7|chr2 (180422187-180422103) | |
| 471-593, gnl|Mm7|chr2 (180422186-180422064) | |
| 471-593, gnl|monDom2|scaffold_1 (179240718-179240865) | |
| 471-593, gnl|monDom2|scaffold_115 (780594-780698) | |
| 471-593, gnl|oryCun1|scaffold_206728 (2867-2951) | |
| 471-593, gnl|oryCun1|scaffold_206728 (2951-2847) | |
| 471-593, gnl|panTro1|chr21 (63013383-63013532) | |
| 471-593, gnl|panTro1|chr3_random (7859525-7859629) | |
| 471-593, gnl|rheMac2|chr10 (2539249-2539100) | |
| 471-593, gnl|rheMac2|chr5 (105675041-105675145) | |
| 471-593, gnl|rn3|chr3_random (1697997-1698115) | |
| 471-593, gnl|rn3|chr3_random (1698102-1698018) | |
| 471-593, gnl|tetNig1|chr11 (1884888-1885049) | |
| 471-593, gnl|tetNig1|chr9 (7169479-7169356) | |
| 471-593, gnl|xenTro1|scaffold_220 (349532-349670) | |
| 471-593, gnl|xenTro1|scaffold_220 (349653-349567) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-161, gnl|bosTau2|chr13 (36276556-36276716) | |
| 1-161, gnl|Hg17|chr20 (60009160-60009000) | |
| 1-161, gnl|Mm7|chr2 (180425487-180425327) | |
| 288-415, gnl|bosTau2|chr13 (36277967-36278094) | |
| 288-415, gnl|Hg17|chr20 (60007561-60007434) | |
| 288-415, gnl|Mm7|chr2 (180423994-180423867) | |
| 471-593, gnl|bosTau2|chr13 (36279391-36279513) | |
| 471-593, gnl|canFam2|chr24 (49139687-49139837) | |
| 471-593, gnl|canFam2|chr7 (65339410-65339306) | |
| 471-593, gnl|danRer3|chr25 (8692495-8692353) | |
| 471-593, gnl|dasNov1|scaffold_4170 (106749-106645) | |
| 471-593, gnl|dasNov1|scaffold_5741 (52205-52075) | |
| 471-593, gnl|echTel1|scaffold_184852 (10714-10570) | |
| 471-593, gnl|echTel1|scaffold_184852 (10585-10668) | |
| 471-593, gnl|fr1|chrUn (148022197-148022346) | |
| 471-593, gnl|fr1|chrUn (57696349-57696182) | |
| 471-593, gnl|galGal2|chr20 (7407190-7407333) | |
| 471-593, gnl|hg17|chr20 (60005990-60006139) | |
| 471-593, gnl|Hg17|chr20 (60006122-60006000) | |
| 471-593, gnl|hg17|chr4 (114106094-114106198) | |
| 471-593, gnl|loxAfr1|scaffold_73336 (6984-6837) | |
| 471-593, gnl|loxAfr1|scaffold_73336 (6851-6935) | |
| 471-593, gnl|mm7|chr2 (180422052-180422202) | |
| 471-593, gnl|mm7|chr2 (180422187-180422103) | |
| 471-593, gnl|Mm7|chr2 (180422186-180422064) | |
| 471-593, gnl|monDom2|scaffold_1 (179240718-179240865) | |
| 471-593, gnl|monDom2|scaffold_115 (780594-780698) | |
| 471-593, gnl|oryCun1|scaffold_206728 (2867-2951) | |
| 471-593, gnl|oryCun1|scaffold_206728 (2951-2847) | |
| 471-593, gnl|panTro1|chr21 (63013383-63013532) | |
| 471-593, gnl|panTro1|chr3_random (7859525-7859629) | |
| 471-593, gnl|rheMac2|chr10 (2539249-2539100) | |
| 471-593, gnl|rheMac2|chr5 (105675041-105675145) | |
| 471-593, gnl|rn3|chr3_random (1697997-1698115) | |
| 471-593, gnl|rn3|chr3_random (1698102-1698018) | |
| 471-593, gnl|tetNig1|chr11 (1884888-1885049) | |
| 471-593, gnl|tetNig1|chr9 (7169479-7169356) | |
| 471-593, gnl|xenTro1|scaffold_220 (349532-349670) | |
| 471-593, gnl|xenTro1|scaffold_220 (349653-349567) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| ecc (0.115035) | |
| cty (0.10408) |