Ss1.1-recc2829c_k7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTAAGTACTTTAAATACTGCAGCACCACAGGATCCTTGAAACCACAA GTAGGGAGGAACTGTATACAGAGGTCTGGCTATAAGTTGTACTCAGATTTTCAACTGCAG AAGGTCAGGACCCCAGCATTGTTCAAGGGTTAACTGTAGTCAGCTGATCAAAAGGAACTC GCTCATCCTAATAAAGATCATCTACAAATCCTCACAGCTAATTACGTCTTTCTTAATAGT GAAGGACTCAATACTCTCCCCTAAAATCTAGAACAAGCGCATCTGTTCCCATTACTTCTA TTCACCTGGTAGTAATACTACAGACCATTTAGTCCATGAACCAGACGTGTTATCTGACCT GGTCTCCACTGTAGTCATAACGCTGAAGAGGTAGAAGACAGGACTGCTCTTTCTACTTCA GTGGCCTGTTCTCTGTTGATTTGTTTGCGTGCAAAGTCAAATCTTTTCATTATCTGCTTT CTTTTTTTTGGCCATTTATAGCCTTCAATTTGACCCAGCACCTCGTCGTGGAGAGCCTCA TGTGACCCGGCGCACCCCAGACTACTTCCTGTAAATTCTTCCTGGGAAAACCTACCTTTA TATGTGGAAGTATACCTGGCTTTTTAAAATATATATATTTCAAAACAAAACAAAAAGCAA CAGTAATCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTAAGTACTTTAAATACTGCAGCACCACAGGATCCTTGAAACCACAA GTAGGGAGGAACTGTATACAGAGGTCTGGCTATAAGTTGTACTCAGATTTTCAACTGCAG AAGGTCAGGACCCCAGCATTGTTCAAGGGTTAACTGTAGTCAGCTGATCAAAAGGAACTC GCTCATCCTAATAAAGATCATCTACAAATCCTCACAGCTAATTACGTCTTTCTTAATAGT GAAGGACTCAATACTCTCCCCTAAAATCTAGAACAAGCGCATCTGTTCCCATTACTTCTA TTCACCTGGTAGTAATACTACAGACCATTTAGTCCATGAACCAGACGTGTTATCTGACCT GGTCTCCACTGTAGTCATAACGCTGAAGAGGTAGAAGACAGGACTGCTCTTTCTACTTCA GTGGCCTGTTCTCTGTTGATTTGTTTGCGTGCAAAGTCAAATCTTTTCATTATCTGCTTT CTTTTTTTTGGCCATTTATAGCCTTCAATTTGACCCAGCACCTCGTCGTGGAGAGCCTCA TGTGACCCGGCGCACCCCAGACTACTTCCTGTAAATTCTTCCTGGGAAAACCTACCTTTA TATGTGGAAGTATACCTGGCTTTTTAAAATATATATATTTCAAAACAAAACAAAAAGCAA CAGTAATCTATG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 541-672, + strand, RNAz p=0.792431 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 541-672, + strand, RNAz p=0.792431 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 6-346, gnl|bosTau2|chr27 (14324350-14324701) | |
| 502-672, gnl|bosTau2|chr18 (45974728-45974559) | |
| 502-672, gnl|canFam2|chr15 (66249896-66250170) | |
| 502-672, gnl|canFam2|chr2 (72788212-72788317) | |
| 502-672, gnl|dasNov1|scaffold_118935 (2613-2509) | |
| 502-672, gnl|dasNov1|scaffold_56346 (8600-8300) | |
| 502-672, gnl|echTel1|scaffold_101674 (3277-3192) | |
| 502-672, gnl|echTel1|scaffold_142506 (180-453) | |
| 502-672, gnl|Hg17|chr16 (31725452-31725616) | |
| 502-672, gnl|hg17|chr4 (169037575-169037838) | |
| 502-672, gnl|hg17|chr7 (11317371-11317494) | |
| 502-672, gnl|loxAfr1|scaffold_2853 (24740-24366) | |
| 502-672, gnl|loxAfr1|scaffold_3721 (81991-82093) | |
| 502-672, gnl|mm7|chr8 (32387275-32386984) | |
| 502-672, gnl|Mm7|chr8 (32386992-32387157) | |
| 502-672, gnl|monDom2|scaffold_1 (17623092-17622901) | |
| 502-672, gnl|monDom2|scaffold_9 (3407626-3407878) | |
| 502-672, gnl|oryCun1|scaffold_175557 (488156-488416) | |
| 502-672, gnl|panTro1|chr3 (186628687-186628950) | |
| 502-672, gnl|panTro1|chr6 (12027663-12027786) | |
| 502-672, gnl|rheMac2|chr3 (114770005-114769885) | |
| 502-672, gnl|rheMac2|chr5 (159916263-159916523) | |
| 502-672, gnl|rn3|chr16 (30313412-30313637) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-346, gnl|bosTau2|chr27 (14324350-14324701) | |
| 502-672, gnl|bosTau2|chr18 (45974728-45974559) | |
| 502-672, gnl|canFam2|chr15 (66249896-66250170) | |
| 502-672, gnl|canFam2|chr2 (72788212-72788317) | |
| 502-672, gnl|dasNov1|scaffold_118935 (2613-2509) | |
| 502-672, gnl|dasNov1|scaffold_56346 (8600-8300) | |
| 502-672, gnl|echTel1|scaffold_101674 (3277-3192) | |
| 502-672, gnl|echTel1|scaffold_142506 (180-453) | |
| 502-672, gnl|Hg17|chr16 (31725452-31725616) | |
| 502-672, gnl|hg17|chr4 (169037575-169037838) | |
| 502-672, gnl|hg17|chr7 (11317371-11317494) | |
| 502-672, gnl|loxAfr1|scaffold_2853 (24740-24366) | |
| 502-672, gnl|loxAfr1|scaffold_3721 (81991-82093) | |
| 502-672, gnl|mm7|chr8 (32387275-32386984) | |
| 502-672, gnl|Mm7|chr8 (32386992-32387157) | |
| 502-672, gnl|monDom2|scaffold_1 (17623092-17622901) | |
| 502-672, gnl|monDom2|scaffold_9 (3407626-3407878) | |
| 502-672, gnl|oryCun1|scaffold_175557 (488156-488416) | |
| 502-672, gnl|panTro1|chr3 (186628687-186628950) | |
| 502-672, gnl|panTro1|chr6 (12027663-12027786) | |
| 502-672, gnl|rheMac2|chr3 (114770005-114769885) | |
| 502-672, gnl|rheMac2|chr5 (159916263-159916523) | |
| 502-672, gnl|rn3|chr16 (30313412-30313637) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| ecc (0.115035) |