Ss1.1-recc2829c_o11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCGGGAGGCCTGGCCCTCCGGCTCCTGGAGCTGAAACTCCGGGTCGTGTTGGAAACG GATGTTTACAGCGTATCAGCGATGTCTCCCTCTGGCCGGCTCTCGTTCTCTTGTATAACT ATGCAGTTCTCTCTGACGTTTCGGGGCGTCTGGGACCCAGCCTGCACAGCCCTGCCCCCG ACACGACGCCAGAGCGCCTGGGATTCCTTTGAAAACCGCTGTCCGCTTTGCGAGCAGACC CTCCTCGCCGGGTGTGGGGACTCTCTGGGGGGGTGGGGGGGGGAGGCTGGCTGGCCGGAC GGGCGGCTCCCCACGTCCTGAATCCGGCTTCCAGGGGAGCCCTGTTGCACCCGCTGCAGG GCCACCGGCAGGTCTGGCTCCTGGCGCTTCTGGAGGCTGCGCGCCTGTGCCCTCTTCTCC TTTGCCAATGTCACCTGACGTTCCCAGCTCTCCAGCGCCTGGACTTACCCTCGTTCTTGT GAGGTCTGTCATACGTTGTTCAGCGTTTGGCTTCCCACCCCTTTGTAGCCACCTTTCTGT GGGCACATAGCCCGGGACCCGTCCTCCCCAGCGGCCACTTCTCGGCCTCGGGGTGTACCT GTGGGGCGCTGCTGGCCACCGAGTGTCGTTTGATTTGTGACCTTGACCTAATAGATAGGC TTGTGTTTTTGTTTTTTGGGTTTTTTTTTAATTTAAAAATGTTAAGACTTAATTCACTAA AATTTATTCTAAGGGGATATTTATACTTTTGTACTTTTTGAGGTATCCGTATTTTATCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCGGGAGGCCTGGCCCTCCGGCTCCTGGAGCTGAAACTCCGGGTCGTGTTGGAAACG GATGTTTACAGCGTATCAGCGATGTCTCCCTCTGGCCGGCTCTCGTTCTCTTGTATAACT ATGCAGTTCTCTCTGACGTTTCGGGGCGTCTGGGACCCAGCCTGCACAGCCCTGCCCCCG ACACGACGCCAGAGCGCCTGGGATTCCTTTGAAAACCGCTGTCCGCTTTGCGAGCAGACC CTCCTCGCCGGGTGTGGGGACTCTCTGGGGGGGTGGGGGGGGGAGGCTGGCTGGCCGGAC GGGCGGCTCCCCACGTCCTGAATCCGGCTTCCAGGGGAGCCCTGTTGCACCCGCTGCAGG GCCACCGGCAGGTCTGGCTCCTGGCGCTTCTGGAGGCTGCGCGCCTGTGCCCTCTTCTCC TTTGCCAATGTCACCTGACGTTCCCAGCTCTCCAGCGCCTGGACTTACCCTCGTTCTTGT GAGGTCTGTCATACGTTGTTCAGCGTTTGGCTTCCCACCCCTTTGTAGCCACCTTTCTGT GGGCACATAGCCCGGGACCCGTCCTCCCCAGCGGCCACTTCTCGGCCTCGGGGTGTACCT GTGGGGCGCTGCTGGCCACCGAGTGTCGTTTGATTTGTGACCTTGACCTAATAGATAGGC TTGTGTTTTTGTTTTTTGGGTTTTTTTTTAATTTAAAAATGTTAAGACTTAATTCACTAA AATTTATTCTAAGGGGATATTTATACTTTTGTACTTTTTGAGGTATCCGTATTTTATCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 475-589, - strand, RNAz p=0.840338 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 475-589, - strand, RNAz p=0.840338 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 374-779, gnl|bosTau2|chr25 (215387-215764) | |
| 374-779, gnl|canFam2|chr6 (41445197-41444851) | |
| 374-779, gnl|canFam2|chr6 (41445149-41444851) | |
| 374-779, gnl|dasNov1|scaffold_56312 (4271-3947) | |
| 374-779, gnl|dasNov1|scaffold_56312 (4240-3947) | |
| 374-779, gnl|hg17|chr16 (2698486-2698837) | |
| 374-779, gnl|Hg17|chr16 (2698579-2698971) | |
| 374-779, gnl|hg17|chr2 (242139588-242139895) | |
| 374-779, gnl|loxAfr1|scaffold_15721 (24331-24697) | |
| 374-779, gnl|loxAfr1|scaffold_15721 (24389-24697) | |
| 374-779, gnl|mm7|chr17 (22229180-22228880) | |
| 374-779, gnl|mm7|chr17 (22229119-22228880) | |
| 374-779, gnl|Mm7|chr17 (22229091-22228734) | |
| 374-779, gnl|monDom2|scaffold_49 (7488346-7487928) | |
| 374-779, gnl|monDom2|scaffold_49 (7488278-7487928) | |
| 374-779, gnl|oryCun1|scaffold_205708 (13131-13431) | |
| 374-779, gnl|oryCun1|scaffold_205708 (13208-13431) | |
| 374-779, gnl|panTro1|chr13_random (35850304-35849995) | |
| 374-779, gnl|panTro1|chr18 (2569811-2570181) | |
| 374-779, gnl|rheMac2|chr12 (105408742-105409047) | |
| 374-779, gnl|rheMac2|chr20 (2847304-2847674) | |
| 374-779, gnl|rn3|chr10 (13298812-13298444) | |
| 374-779, gnl|rn3|chr10 (13298745-13298444) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 374-779, gnl|bosTau2|chr25 (215387-215764) | |
| 374-779, gnl|canFam2|chr6 (41445197-41444851) | |
| 374-779, gnl|canFam2|chr6 (41445149-41444851) | |
| 374-779, gnl|dasNov1|scaffold_56312 (4271-3947) | |
| 374-779, gnl|dasNov1|scaffold_56312 (4240-3947) | |
| 374-779, gnl|hg17|chr16 (2698486-2698837) | |
| 374-779, gnl|Hg17|chr16 (2698579-2698971) | |
| 374-779, gnl|hg17|chr2 (242139588-242139895) | |
| 374-779, gnl|loxAfr1|scaffold_15721 (24331-24697) | |
| 374-779, gnl|loxAfr1|scaffold_15721 (24389-24697) | |
| 374-779, gnl|mm7|chr17 (22229180-22228880) | |
| 374-779, gnl|mm7|chr17 (22229119-22228880) | |
| 374-779, gnl|Mm7|chr17 (22229091-22228734) | |
| 374-779, gnl|monDom2|scaffold_49 (7488346-7487928) | |
| 374-779, gnl|monDom2|scaffold_49 (7488278-7487928) | |
| 374-779, gnl|oryCun1|scaffold_205708 (13131-13431) | |
| 374-779, gnl|oryCun1|scaffold_205708 (13208-13431) | |
| 374-779, gnl|panTro1|chr13_random (35850304-35849995) | |
| 374-779, gnl|panTro1|chr18 (2569811-2570181) | |
| 374-779, gnl|rheMac2|chr12 (105408742-105409047) | |
| 374-779, gnl|rheMac2|chr20 (2847304-2847674) | |
| 374-779, gnl|rn3|chr10 (13298812-13298444) | |
| 374-779, gnl|rn3|chr10 (13298745-13298444) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cga (0.279096) | |
| sin (0.174948) | |
| cli (0.152812) | |
| che (0.136314) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| sin (0.174948) | |
| cli (0.152812) | |
| che (0.136314) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| eje (0.0988338) |