Non-Coding RNA Search

Ss1.1-recc2831c_a9.5

Sequence:


               
               ACCTTTCACGTGTGGATCTCTCTCCTGACCACCATGGGAAGTGTCTGCCAGATTCCATTT
TCTAAGAGTTTCTGAGGGTGAGGCTCTTTTATTTTTATTTTTATTTTTTGAAGGGAGCCA
ATCTATTTCCTGCACTTCAAGAAGAATCAAAAATGTGCCTGAATTCTCAAATACCTCATG
CAAAAATGTCTCCTGAAATAAGGGAAGAAAAACACACACAAACTTTGAAAAATCTTAATG
TTGAAGTTAGCGATGCCGAAAGGTTTCTGTCTTAAAAAAAAAATCTTAGCAGTTTTGCCC
CTCAGGCAGTCGGTTCTGTGGAGAACTGTGTTCTGCATTACCTCTCAGCGGATCTCAAGG
CAGTTTACCTCCAGATCCCATACTTAGAGTTAACTCTTTTCTTTGCAGCAAAACTCCATT
TGGATGAAAGATGAATTTGGATATTTATTTCCCCTTTTCTTTGGGAAATGAGAGGTTACA
ACCAGGACAGTGAATCTCGCACGCACACATGCGCGCACAGACACACGCGCATCCACGGAA
ACGCAGGGTCCTCTATGGGCCGCCAAGGGGAGTCGACGCGGTTGAGAACGAATGCAGAGG
ACACCGAGTCTGTCGTTCGTTTTTTTCTCTGAAGTGCTGAAGGTAGGAAATGGGCCAGGG
TTGGGGACTGATCGCCCCCCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTTCACGTGTGGATCTCTCTCCTGACCACCATGGGAAGTGTCTGCCAGATTCCATTT
TCTAAGAGTTTCTGAGGGTGAGGCTCTTTTATTTTTATTTTTATTTTTTGAAGGGAGCCA
ATCTATTTCCTGCACTTCAAGAAGAATCAAAAATGTGCCTGAATTCTCAAATACCTCATG
CAAAAATGTCTCCTGAAATAAGGGAAGAAAAACACACACAAACTTTGAAAAATCTTAATG
TTGAAGTTAGCGATGCCGAAAGGTTTCTGTCTTAAAAAAAAAATCTTAGCAGTTTTGCCC
CTCAGGCAGTCGGTTCTGTGGAGAACTGTGTTCTGCATTACCTCTCAGCGGATCTCAAGG
CAGTTTACCTCCAGATCCCATACTTAGAGTTAACTCTTTTCTTTGCAGCAAAACTCCATT
TGGATGAAAGATGAATTTGGATATTTATTTCCCCTTTTCTTTGGGAAATGAGAGGTTACA
ACCAGGACAGTGAATCTCGCACGCACACATGCGCGCACAGACACACGCGCATCCACGGAA
ACGCAGGGTCCTCTATGGGCCGCCAAGGGGAGTCGACGCGGTTGAGAACGAATGCAGAGG
ACACCGAGTCTGTCGTTCGTTTTTTTCTCTGAAGTGCTGAAGGTAGGAAATGGGCCAGGG
TTGGGGACTGATCGCCCCCCGCCT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-223, gnl|bosTau2|chr17 (28922944-28923153)
               

               
               1-223, gnl|canFam2|chr26 (10283466-10282543)
               

               
               1-223, gnl|dasNov1|scaffold_59982 (8677-7824)
               

               
               1-223, gnl|echTel1|scaffold_138501 (914-4)
               

               
               1-223, gnl|hg17|chr12 (120960619-120961551)
               

               
               1-223, gnl|Hg17|chr12 (120961329-120961535)
               

               
               1-223, gnl|loxAfr1|scaffold_1861 (79133-80038)
               

               
               1-223, gnl|mm7|chr5 (122616513-122617471)
               

               
               1-223, gnl|Mm7|chr5 (122617247-122617454)
               

               
               1-223, gnl|monDom2|scaffold_97 (2312097-2312956)
               

               
               1-223, gnl|oryCun1|scaffold_108222 (19525-18767)
               

               
               1-223, gnl|panTro1|chrUn_random (17221484-17222417)
               

               
               1-223, gnl|rheMac2|chr11 (123154919-123155849)
               

               
               1-223, gnl|rn3|chr12 (34227810-34226841)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr17 (28922944-28923153)
               

               
               1-223, gnl|canFam2|chr26 (10283466-10282543)
               

               
               1-223, gnl|dasNov1|scaffold_59982 (8677-7824)
               

               
               1-223, gnl|echTel1|scaffold_138501 (914-4)
               

               
               1-223, gnl|hg17|chr12 (120960619-120961551)
               

               
               1-223, gnl|Hg17|chr12 (120961329-120961535)
               

               
               1-223, gnl|loxAfr1|scaffold_1861 (79133-80038)
               

               
               1-223, gnl|mm7|chr5 (122616513-122617471)
               

               
               1-223, gnl|Mm7|chr5 (122617247-122617454)
               

               
               1-223, gnl|monDom2|scaffold_97 (2312097-2312956)
               

               
               1-223, gnl|oryCun1|scaffold_108222 (19525-18767)
               

               
               1-223, gnl|panTro1|chrUn_random (17221484-17222417)
               

               
               1-223, gnl|rheMac2|chr11 (123154919-123155849)
               

               
               1-223, gnl|rn3|chr12 (34227810-34226841)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-223, gnl\|bosTau2\|chr17 (28922944-28923153)
	1-223, gnl\|canFam2\|chr26 (10283466-10282543)
	1-223, gnl\|dasNov1\|scaffold_59982 (8677-7824)
	1-223, gnl\|echTel1\|scaffold_138501 (914-4)
	1-223, gnl\|hg17\|chr12 (120960619-120961551)
	1-223, gnl\|Hg17\|chr12 (120961329-120961535)
	1-223, gnl\|loxAfr1\|scaffold_1861 (79133-80038)
	1-223, gnl\|mm7\|chr5 (122616513-122617471)
	1-223, gnl\|Mm7\|chr5 (122617247-122617454)
	1-223, gnl\|monDom2\|scaffold_97 (2312097-2312956)
	1-223, gnl\|oryCun1\|scaffold_108222 (19525-18767)
	1-223, gnl\|panTro1\|chrUn_random (17221484-17222417)
	1-223, gnl\|rheMac2\|chr11 (123154919-123155849)
	1-223, gnl\|rn3\|chr12 (34227810-34226841)