Non-Coding RNA Search

Ss1.1-recc2831c_b15.5

Sequence:


               
               TAAAATGTAAGTGGAAATTCTATGCCTTGGATACACACCGCTCTTCAGGTTGTACAATAA
ACATACATTGGGGAAAGGTTTAAGATTATATAGTACTTAAATATAGGAAAATGCACACTC
ATGTTGATTCCTATGCTAAAACACATTTATGGTCTTTTTTCTGTATTTCTAGAATGGTAT
TTGAATTAAATGTTCATCTAGTGTTAGGCACTATAGTATTTATATTGAAGCTTGTATTTT
TAACTGTTGCTTGTTCTCTTAAAAGGTATCAATGTACCTTTTTTGGTAGTGGAAAAAAAA
AAGACAGGCTGCCACAGTATATTTTTTTAATTTGGCAGGATAATATAGTGCAAATTATTT
GTATGCTTCAAAAAAAAAAAAAAAGAGAGAGAAACAAAAAAGTGTGACATTGTACAGATG
AGAAGCCATATAATGGCAGTTTGGGGGAGCCTGCTAGAATGTCACACGGATGGCTGTCTT
AGGGGTTGTACATATCCTTTTTTGTTCCTTTTTCCTGCTGCCATACTGTATGCAGTACTG
CAAGCTAATAACGTTGGTTTGTTATGTAGTGTGCTTTTTGTCCCTTTCCTTCTATCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAATGTAAGTGGAAATTCTATGCCTTGGATACACACCGCTCTTCAGGTTGTACAATAA
ACATACATTGGGGAAAGGTTTAAGATTATATAGTACTTAAATATAGGAAAATGCACACTC
ATGTTGATTCCTATGCTAAAACACATTTATGGTCTTTTTTCTGTATTTCTAGAATGGTAT
TTGAATTAAATGTTCATCTAGTGTTAGGCACTATAGTATTTATATTGAAGCTTGTATTTT
TAACTGTTGCTTGTTCTCTTAAAAGGTATCAATGTACCTTTTTTGGTAGTGGAAAAAAAA
AAGACAGGCTGCCACAGTATATTTTTTTAATTTGGCAGGATAATATAGTGCAAATTATTT
GTATGCTTCAAAAAAAAAAAAAAAGAGAGAGAAACAAAAAAGTGTGACATTGTACAGATG
AGAAGCCATATAATGGCAGTTTGGGGGAGCCTGCTAGAATGTCACACGGATGGCTGTCTT
AGGGGTTGTACATATCCTTTTTTGTTCCTTTTTCCTGCTGCCATACTGTATGCAGTACTG
CAAGCTAATAACGTTGGTTTGTTATGTAGTGTGCTTTTTGTCCCTTTCCTTCTATCACCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               152-254, - strand, RNAz p=0.993194
               

               
               212-328, - strand, RNAz p=0.944124
               

               
               369-600, - strand, RNAz p=0.984138

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-254, - strand, RNAz p=0.993194
               

               
               212-328, - strand, RNAz p=0.944124
               

               
               369-600, - strand, RNAz p=0.984138

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               386-600, tg96d12.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE 
(gb|AI523814.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, UI-HF-BP0p-aiq-f-03-0-UI.r1 NIH_MGC_51 Homo sapiens cDNA clone 
(gb|AW500827.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, 7q87a08.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BF223338.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, AGENCOURT_7844758 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BU164469.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, JHU096H09L693 Canine cardiovascular system biased cDNA Canis 
(gb|DR105753.1|), blast E-value=0, identity=98.6% 
               

               
               386-600, yx53b08.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(gb|N21278.1|), blast E-value=0, identity=97.67%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               386-600, tg96d12.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE 
(gb|AI523814.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, UI-HF-BP0p-aiq-f-03-0-UI.r1 NIH_MGC_51 Homo sapiens cDNA clone 
(gb|AW500827.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, 7q87a08.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BF223338.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, AGENCOURT_7844758 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BU164469.1|), blast E-value=0, identity=97.67% 
               

               
               386-600, JHU096H09L693 Canine cardiovascular system biased cDNA Canis 
(gb|DR105753.1|), blast E-value=0, identity=98.6% 
               

               
               386-600, yx53b08.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(gb|N21278.1|), blast E-value=0, identity=97.67%

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-600, gnl|bosTau2|chr11 (29351301-29350701)
               

               
               2-600, gnl|canFam2|chr10 (63742753-63743276)
               

               
               2-600, gnl|danRer3|chr13 (25423190-25423722)
               

               
               2-600, gnl|dasNov1|scaffold_53 (179014-179538)
               

               
               2-600, gnl|echTel1|scaffold_320552 (72152-71614)
               

               
               2-600, gnl|fr1|chrUn (84711167-84711734)
               

               
               2-600, gnl|galGal2|chr3 (579057-578551)
               

               
               2-600, gnl|hg17|chr2 (60596517-60597038)
               

               
               2-600, gnl|Hg17|chr2 (60597124-60596527)
               

               
               2-600, gnl|loxAfr1|scaffold_1712 (5429-4898)
               

               
               2-600, gnl|mm7|chr11 (24119898-24119380)
               

               
               2-600, gnl|Mm7|chr11 (24119268-24119886)
               

               
               2-600, gnl|monDom2|scaffold_1 (25088292-25088814)
               

               
               2-600, gnl|oryCun1|scaffold_212573 (117866-118380)
               

               
               2-600, gnl|panTro1|chr12 (62776640-62777160)
               

               
               2-600, gnl|rheMac2|chr13 (60610271-60610788)
               

               
               2-600, gnl|rn3|chr14 (105110299-105109760)
               

               
               2-600, gnl|tetNig1|chr17 (8372831-8373398)
               

               
               2-600, gnl|xenTro1|scaffold_562 (38986-39535)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-600, gnl|bosTau2|chr11 (29351301-29350701)
               

               
               2-600, gnl|canFam2|chr10 (63742753-63743276)
               

               
               2-600, gnl|danRer3|chr13 (25423190-25423722)
               

               
               2-600, gnl|dasNov1|scaffold_53 (179014-179538)
               

               
               2-600, gnl|echTel1|scaffold_320552 (72152-71614)
               

               
               2-600, gnl|fr1|chrUn (84711167-84711734)
               

               
               2-600, gnl|galGal2|chr3 (579057-578551)
               

               
               2-600, gnl|hg17|chr2 (60596517-60597038)
               

               
               2-600, gnl|Hg17|chr2 (60597124-60596527)
               

               
               2-600, gnl|loxAfr1|scaffold_1712 (5429-4898)
               

               
               2-600, gnl|mm7|chr11 (24119898-24119380)
               

               
               2-600, gnl|Mm7|chr11 (24119268-24119886)
               

               
               2-600, gnl|monDom2|scaffold_1 (25088292-25088814)
               

               
               2-600, gnl|oryCun1|scaffold_212573 (117866-118380)
               

               
               2-600, gnl|panTro1|chr12 (62776640-62777160)
               

               
               2-600, gnl|rheMac2|chr13 (60610271-60610788)
               

               
               2-600, gnl|rn3|chr14 (105110299-105109760)
               

               
               2-600, gnl|tetNig1|chr17 (8372831-8373398)
               

               
               2-600, gnl|xenTro1|scaffold_562 (38986-39535)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ecc (0.115035)

	152-254, - strand, RNAz p=0.993194
	212-328, - strand, RNAz p=0.944124
	369-600, - strand, RNAz p=0.984138

	386-600, tg96d12.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE (gb\|AI523814.1\|), blast E-value=0, identity=97.67%
	386-600, UI-HF-BP0p-aiq-f-03-0-UI.r1 NIH_MGC_51 Homo sapiens cDNA clone (gb\|AW500827.1\|), blast E-value=0, identity=97.67%
	386-600, 7q87a08.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb\|BF223338.1\|), blast E-value=0, identity=97.67%
	386-600, AGENCOURT_7844758 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BU164469.1\|), blast E-value=0, identity=97.67%
	386-600, JHU096H09L693 Canine cardiovascular system biased cDNA Canis (gb\|DR105753.1\|), blast E-value=0, identity=98.6%
	386-600, yx53b08.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone (gb\|N21278.1\|), blast E-value=0, identity=97.67%

	2-600, gnl\|bosTau2\|chr11 (29351301-29350701)
	2-600, gnl\|canFam2\|chr10 (63742753-63743276)
	2-600, gnl\|danRer3\|chr13 (25423190-25423722)
	2-600, gnl\|dasNov1\|scaffold_53 (179014-179538)
	2-600, gnl\|echTel1\|scaffold_320552 (72152-71614)
	2-600, gnl\|fr1\|chrUn (84711167-84711734)
	2-600, gnl\|galGal2\|chr3 (579057-578551)
	2-600, gnl\|hg17\|chr2 (60596517-60597038)
	2-600, gnl\|Hg17\|chr2 (60597124-60596527)
	2-600, gnl\|loxAfr1\|scaffold_1712 (5429-4898)
	2-600, gnl\|mm7\|chr11 (24119898-24119380)
	2-600, gnl\|Mm7\|chr11 (24119268-24119886)
	2-600, gnl\|monDom2\|scaffold_1 (25088292-25088814)
	2-600, gnl\|oryCun1\|scaffold_212573 (117866-118380)
	2-600, gnl\|panTro1\|chr12 (62776640-62777160)
	2-600, gnl\|rheMac2\|chr13 (60610271-60610788)
	2-600, gnl\|rn3\|chr14 (105110299-105109760)
	2-600, gnl\|tetNig1\|chr17 (8372831-8373398)
	2-600, gnl\|xenTro1\|scaffold_562 (38986-39535)