Non-Coding RNA Search

Ss1.1-recc2831c_d16.5

Sequence:


               
               GCCATAGCGGCGGCTCCGAGCCCAATCTGGCACTCAAGGCCTTGCCCTTGAACGGCTCCC
CTTTGCGCTTCGACAAGTACCGGAACTCGGATTTTGCCCATCTCATTCCCTTGACGATGT
TATACCCCAAGAACCAGTTGGATCTCACATTCCACCCTCCCCGACCTCAGACTGCGCCGC
CCAGCATCCCCTCGCCCAAACACTCCTTCCTCGCCTATCTCGGGCTAAGAGAGAGAGCAG
AGACTGTCTGAGGGCAGCTGGGCTCTGTACCAAAAACCAAGAGACAGAGACAAAACCACA
AAACCCACAAAACTTAAACACAAACCCAGCAGGTGTATGTTGCTGCAAAATCTACAGACC
CGCGCCTGGGTCTGGACCACGTGTACTGTATATCTTTAGTAAGGACTAGAGAAAATTGGC
TCTGTGTGTATACCTATTGCATTGACCTGAAAGCTGCTTTATCCAGTCTTCAGAGAGGTG
ACCCACTGCGTCCATGTACCTTCAGAGGCATGCCTCCCCAGCCACCCACTCCCACTCTCA
GCCCTTCTCCGTACTTTCATCTGAAAGGAAAGTTGTCTCCTTAAACCCTACAGAGAGTGT
CCTTAATAGCAATCAGCACTTGTCAGCGTCTCTACCGGTGCATTCTGTTTTCTGTTGGGT
GAATGGGGCGCGCGTGGGCGTTCGTGGATTCAGAGACAGCCGTGTGTCGTGTGCCATGAC
ATTTGCACATTCTTTGTACTGGCTTCTTTCACAGCGATGAACATCCTCTCTCCTCCCGGG
TTGTTTATCCACTACAGTCGCTCCCTGAGCTCCTCCGTTCCCTTTCCCTCTCTAGTTTAT
GGCTACAGAGTGGGAGGGCCTAGTGCTCACTCGATGAAGGAATGGTAGATATGCCCAGTG
CTGCCTGAGATTTCCCCACATCCTGGAGACCTGGTGCTGGGCTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATAGCGGCGGCTCCGAGCCCAATCTGGCACTCAAGGCCTTGCCCTTGAACGGCTCCC
CTTTGCGCTTCGACAAGTACCGGAACTCGGATTTTGCCCATCTCATTCCCTTGACGATGT
TATACCCCAAGAACCAGTTGGATCTCACATTCCACCCTCCCCGACCTCAGACTGCGCCGC
CCAGCATCCCCTCGCCCAAACACTCCTTCCTCGCCTATCTCGGGCTAAGAGAGAGAGCAG
AGACTGTCTGAGGGCAGCTGGGCTCTGTACCAAAAACCAAGAGACAGAGACAAAACCACA
AAACCCACAAAACTTAAACACAAACCCAGCAGGTGTATGTTGCTGCAAAATCTACAGACC
CGCGCCTGGGTCTGGACCACGTGTACTGTATATCTTTAGTAAGGACTAGAGAAAATTGGC
TCTGTGTGTATACCTATTGCATTGACCTGAAAGCTGCTTTATCCAGTCTTCAGAGAGGTG
ACCCACTGCGTCCATGTACCTTCAGAGGCATGCCTCCCCAGCCACCCACTCCCACTCTCA
GCCCTTCTCCGTACTTTCATCTGAAAGGAAAGTTGTCTCCTTAAACCCTACAGAGAGTGT
CCTTAATAGCAATCAGCACTTGTCAGCGTCTCTACCGGTGCATTCTGTTTTCTGTTGGGT
GAATGGGGCGCGCGTGGGCGTTCGTGGATTCAGAGACAGCCGTGTGTCGTGTGCCATGAC
ATTTGCACATTCTTTGTACTGGCTTCTTTCACAGCGATGAACATCCTCTCTCCTCCCGGG
TTGTTTATCCACTACAGTCGCTCCCTGAGCTCCTCCGTTCCCTTTCCCTCTCTAGTTTAT
GGCTACAGAGTGGGAGGGCCTAGTGCTCACTCGATGAAGGAATGGTAGATATGCCCAGTG
CTGCCTGAGATTTCCCCACATCCTGGAGACCTGGTGCTGGGCTCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55623290|ref|XP_517467.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623290|ref|XP_517467.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               206-435, - strand, RNAz p=0.920035
               

               
               727-840, - strand, RNAz p=0.99473

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-435, - strand, RNAz p=0.920035
               

               
               727-840, - strand, RNAz p=0.99473

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-948, gnl|bosTau2|chr17 (7909456-7910397)
               

               
               7-948, gnl|Hg17|chr4 (147039780-147038826)
               

               
               7-948, gnl|Mm7|chr8 (77730465-77731458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-948, gnl|bosTau2|chr17 (7909456-7910397)
               

               
               7-948, gnl|Hg17|chr4 (147039780-147038826)
               

               
               7-948, gnl|Mm7|chr8 (77730465-77731458)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	206-435, - strand, RNAz p=0.920035
	727-840, - strand, RNAz p=0.99473

	7-948, gnl\|bosTau2\|chr17 (7909456-7910397)
	7-948, gnl\|Hg17\|chr4 (147039780-147038826)
	7-948, gnl\|Mm7\|chr8 (77730465-77731458)