Non-Coding RNA Search

Ss1.1-recc2831c_h14.5

Sequence:


               
               CTCCCCAGCGCCCCCGCCCCACGGACTCTTGCCCAGGTGCAATCTCTCCTGACCCCCACC
TTCTGTGCCATCTTGTCTGTGGGACAGTTGCCTCCCCCTCATCTCCAGTGGCTCAGCCTA
CACAAAGGTAGGAACACTCCATCCCGCCCCCAGCGGGCCCTCCTCCTTCGTGGTCTCTCG
CGCTCCGCCCCACATTTGCCAGTGAAGTCATTCATTCTGTGGAACAGTTCCGCACTCCCA
AGTCCAGTGGACACATCCGTTTATGAGGAGGACTCCTCACACTGCGGCTGGAGGCTGATG
CCTGGACCGCTCCTCCCGGGCTCATCCCAGAAACATTCCTCCACCCTCCCCCTCCCTCCC
GTGGAGCCTCCTGTCAGCGGAGGCTGGACTCTTCTCAGAGGTCTCATCCCTGCCCGCATC
CAGGTGCCCAGGGTGGAGCACCTGGAGGCCAGTTTGGTCTCCACGTTTCTGCATCCCCTC
ATCCCCTTGGTACAGCTGTTCAGTGGTCCTGGCCCCAGCCAGCGCCCCCGCAGCCCCGCT
GTACCACTCTAACCAGACGCGAGGGGAAGATGCAGACCCCAGGTGCTGCACCCACTTCTC
CCTGGGGAAAGGGACTGGACCCTGGCGGGAGGGGATGGGAGGGCTTTTAATTTATTTCTC
TTTTCTTTTGAGGCTTCCCCTCTCTGAGCCAGTTTTCATTTCCTCCCGGTGGCATTAGCC
ACTCCCTGCCTCCCACCCCAGACCTGTGCCCACAACCAGGGAGGTGGGCTGGGAGCAAAA
GGAGAGGGTGGGACCCAGTTTTGTGCGGTTGATTTTTATTAATTATCTGGATAACAGCAA
GAAACCAAGAATAAAGATTGAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCAGCGCCCCCGCCCCACGGACTCTTGCCCAGGTGCAATCTCTCCTGACCCCCACC
TTCTGTGCCATCTTGTCTGTGGGACAGTTGCCTCCCCCTCATCTCCAGTGGCTCAGCCTA
CACAAAGGTAGGAACACTCCATCCCGCCCCCAGCGGGCCCTCCTCCTTCGTGGTCTCTCG
CGCTCCGCCCCACATTTGCCAGTGAAGTCATTCATTCTGTGGAACAGTTCCGCACTCCCA
AGTCCAGTGGACACATCCGTTTATGAGGAGGACTCCTCACACTGCGGCTGGAGGCTGATG
CCTGGACCGCTCCTCCCGGGCTCATCCCAGAAACATTCCTCCACCCTCCCCCTCCCTCCC
GTGGAGCCTCCTGTCAGCGGAGGCTGGACTCTTCTCAGAGGTCTCATCCCTGCCCGCATC
CAGGTGCCCAGGGTGGAGCACCTGGAGGCCAGTTTGGTCTCCACGTTTCTGCATCCCCTC
ATCCCCTTGGTACAGCTGTTCAGTGGTCCTGGCCCCAGCCAGCGCCCCCGCAGCCCCGCT
GTACCACTCTAACCAGACGCGAGGGGAAGATGCAGACCCCAGGTGCTGCACCCACTTCTC
CCTGGGGAAAGGGACTGGACCCTGGCGGGAGGGGATGGGAGGGCTTTTAATTTATTTCTC
TTTTCTTTTGAGGCTTCCCCTCTCTGAGCCAGTTTTCATTTCCTCCCGGTGGCATTAGCC
ACTCCCTGCCTCCCACCCCAGACCTGTGCCCACAACCAGGGAGGTGGGCTGGGAGCAAAA
GGAGAGGGTGGGACCCAGTTTTGTGCGGTTGATTTTTATTAATTATCTGGATAACAGCAA
GAAACCAAGAATAAAGATTGAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               192-369, - strand, RNAz p=0.999662
               

               
               631-812, + strand, RNAz p=0.996626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-369, - strand, RNAz p=0.999662
               

               
               631-812, + strand, RNAz p=0.996626

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               649-774, + strand, RNAmicro p=1
               

               
               644-786, - strand, RNAmicro p=0.958648

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               649-774, + strand, RNAmicro p=1
               

               
               644-786, - strand, RNAmicro p=0.958648

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC090849, +
               

               
               5' of BC090849, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC090849, +
               

               
               5' of BC090849, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-867, gnl|bosTau2|chr23 (23701501-23702381)
               

               
               4-867, gnl|Hg17|chr6 (32244852-32243967)
               

               
               4-867, gnl|Mm7|chr17 (32697980-32698825)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-867, gnl|bosTau2|chr23 (23701501-23702381)
               

               
               4-867, gnl|Hg17|chr6 (32244852-32243967)
               

               
               4-867, gnl|Mm7|chr17 (32697980-32698825)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	192-369, - strand, RNAz p=0.999662
	631-812, + strand, RNAz p=0.996626

	649-774, + strand, RNAmicro p=1
	644-786, - strand, RNAmicro p=0.958648

	4-867, gnl\|bosTau2\|chr23 (23701501-23702381)
	4-867, gnl\|Hg17\|chr6 (32244852-32243967)
	4-867, gnl\|Mm7\|chr17 (32697980-32698825)

	ese (0.253004)
	ece (0.229305)
	fcc (0.197785)
	ton (0.1755)
	fbs (0.175346)
	hyp (0.142837)
	lnt (0.142308)
	cov (0.132153)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)