Ss1.1-recc2831c_m22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGTGACAGCAGTGAAGACAGCAGCGAGGAGGAAAAAGCCCAAGGACCTCCAGCTAAGA AAGCTGCTGCACCTGCCAAACGGGCCGGTCTTCCTCAGCAGCCTGGAAAGGCTACAGCCA AGGCATCAGAGAGCAGCAGCAGCAGCAGCAGTGAAGAATCCAGTGATGAGGAAGAGGACA AAAAGAAAAAGCCTGTTCAGAAGGTAGTTAAGCCCCAAGGCAAGGCAGTCAAAGCTCCTC CTAAGAAGGCTGAGAGCTCTGATTCCGATTCTGACTCAAGCTCAGAGGATGAGGCACCAA AGAACCAGAAGCCAAAGACAGCAGCCGTGGCAGCTAAAGCTCAGGCTAAAGTGCCAGCCA AAACAGGTACACCAGCTCGGGCAGCACCTAAAGTAGCCAATGGCAAAGCAGCTAGCAGCA GCAGTAGTAGCAGCAGCAGCAGTGATGATGACTCAGAGGAGGAGAAGGCAGCAGCTGTCT CCAAGAAGACGGTACCTAAAAAGCAAGTTGTGGTCAAGGCCCCAGTGAAAGCAGCTGCTG CTCCTGCCCAGAAGAGTTCCAGCAGTGAGGACTCCTCCAGTGAGGAGGAAGAGGAAGAAC AGAAGAAAAAACCAATGAAGAAAAAACCAGGTACTTATAGTTCAGTTCCCCCACCTTCAG TTCCGTCACCCAAGAAGCCCCTGGGAACCCAGGCTCCCAAGAAAGCTGCAGGGAAGCAGG AGCCTGTGGAGAGCAGTGAGGACAGCAGCGACGAGTCTGATTCAAGTTCTGAGGAAGAAA AGAAACCCCCAGCTAAGGCAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGTGACAGCAGTGAAGACAGCAGCGAGGAGGAAAAAGCCCAAGGACCTCCAGCTAAGA AAGCTGCTGCACCTGCCAAACGGGCCGGTCTTCCTCAGCAGCCTGGAAAGGCTACAGCCA AGGCATCAGAGAGCAGCAGCAGCAGCAGCAGTGAAGAATCCAGTGATGAGGAAGAGGACA AAAAGAAAAAGCCTGTTCAGAAGGTAGTTAAGCCCCAAGGCAAGGCAGTCAAAGCTCCTC CTAAGAAGGCTGAGAGCTCTGATTCCGATTCTGACTCAAGCTCAGAGGATGAGGCACCAA AGAACCAGAAGCCAAAGACAGCAGCCGTGGCAGCTAAAGCTCAGGCTAAAGTGCCAGCCA AAACAGGTACACCAGCTCGGGCAGCACCTAAAGTAGCCAATGGCAAAGCAGCTAGCAGCA GCAGTAGTAGCAGCAGCAGCAGTGATGATGACTCAGAGGAGGAGAAGGCAGCAGCTGTCT CCAAGAAGACGGTACCTAAAAAGCAAGTTGTGGTCAAGGCCCCAGTGAAAGCAGCTGCTG CTCCTGCCCAGAAGAGTTCCAGCAGTGAGGACTCCTCCAGTGAGGAGGAAGAGGAAGAAC AGAAGAAAAAACCAATGAAGAAAAAACCAGGTACTTATAGTTCAGTTCCCCCACCTTCAG TTCCGTCACCCAAGAAGCCCCTGGGAACCCAGGCTCCCAAGAAAGCTGCAGGGAAGCAGG AGCCTGTGGAGAGCAGTGAGGACAGCAGCGACGAGTCTGATTCAAGTTCTGAGGAAGAAA AGAAACCCCCAGCTAAGGCAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 226-369, - strand, RNAz p=0.987714 | |
| 262-369, - strand, RNAz p=0.704045 | |
| 508-621, + strand, RNAz p=0.950716 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 226-369, - strand, RNAz p=0.987714 | |
| 262-369, - strand, RNAz p=0.704045 | |
| 508-621, + strand, RNAz p=0.950716 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 198-369, gnl|bosTau2|chr26 (15316138-15316309) | |
| 198-369, gnl|canFam2|chr28 (17693147-17693308) | |
| 198-369, gnl|canFam2|chr28 (17693135-17693318) | |
| 198-369, gnl|canFam2|chr28 (17693312-17693206) | |
| 198-369, gnl|danRer3|chr13 (21727823-21727922) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38437-38279) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38440-38280) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38270-38378) | |
| 198-369, gnl|echTel1|scaffold_294327 (36257-36422) | |
| 198-369, gnl|echTel1|scaffold_294327 (36245-36428) | |
| 198-369, gnl|echTel1|scaffold_294327 (36423-36316) | |
| 198-369, gnl|fr1|chrUn (213499158-213499011) | |
| 198-369, gnl|fr1|chrUn (213497839-213497905) | |
| 198-369, gnl|galGal2|chr6 (15999357-15999536) | |
| 198-369, gnl|hg17|chr10 (103907788-103907971) | |
| 198-369, gnl|Hg17|chr10 (103907793-103907964) | |
| 198-369, gnl|hg17|chr8 (138778598-138778760) | |
| 198-369, gnl|hg17|chrX (8759695-8759806) | |
| 198-369, gnl|mm7|chr19 (45976537-45976724) | |
| 198-369, gnl|Mm7|chr19 (45976542-45976722) | |
| 198-369, gnl|mm7|chrX (19794549-19794711) | |
| 198-369, gnl|mm7|chrX (19794711-19794606) | |
| 198-369, gnl|monDom2|scaffold_14 (61261238-61260947) | |
| 198-369, gnl|monDom2|scaffold_14 (61256217-61256301) | |
| 198-369, gnl|monDom2|scaffold_26 (41019864-41019659) | |
| 198-369, gnl|oryCun1|scaffold_204270 (7043-6878) | |
| 198-369, gnl|oryCun1|scaffold_204270 (7057-6874) | |
| 198-369, gnl|oryCun1|scaffold_204270 (6878-6986) | |
| 198-369, gnl|panTro1|chr7 (141760602-141760764) | |
| 198-369, gnl|panTro1|chr8 (105668117-105668300) | |
| 198-369, gnl|panTro1|chrX (9027689-9027800) | |
| 198-369, gnl|rheMac2|chr8 (140206797-140206957) | |
| 198-369, gnl|rheMac2|chr9 (101817554-101817737) | |
| 198-369, gnl|rheMac2|chrX (6572850-6572958) | |
| 198-369, gnl|rn3|chr1 (251562208-251562385) | |
| 198-369, gnl|rn3|chr1 (251562196-251562384) | |
| 198-369, gnl|rn3|chr1 (251562385-251562265) | |
| 198-369, gnl|tetNig1|chr17 (3083744-3083637) | |
| 487-632, gnl|bosTau2|chr26 (15318284-15318429) | |
| 487-632, gnl|canFam2|chr28 (17694520-17694641) | |
| 487-632, gnl|canFam2|chr28 (17694504-17694640) | |
| 487-632, gnl|danRer3|chr13 (21734426-21734308) | |
| 487-632, gnl|dasNov1|scaffold_45634 (8573-8678) | |
| 487-632, gnl|dasNov1|scaffold_45634 (8557-8684) | |
| 487-632, gnl|echTel1|scaffold_294327 (37192-37303) | |
| 487-632, gnl|echTel1|scaffold_294327 (37173-37302) | |
| 487-632, gnl|galGal2|chr6 (16001710-16001803) | |
| 487-632, gnl|hg17|chr10 (103909165-103909292) | |
| 487-632, gnl|Hg17|chr10 (103909178-103909317) | |
| 487-632, gnl|hg17|chr8 (138778869-138778981) | |
| 487-632, gnl|loxAfr1|scaffold_12349 (37994-38105) | |
| 487-632, gnl|loxAfr1|scaffold_12349 (37977-38104) | |
| 487-632, gnl|mm7|chr19 (45978160-45978287) | |
| 487-632, gnl|Mm7|chr19 (45978173-45978312) | |
| 487-632, gnl|mm7|chrX (19794850-19794960) | |
| 487-632, gnl|monDom2|scaffold_14 (61260047-61259929) | |
| 487-632, gnl|monDom2|scaffold_26 (41019544-41019381) | |
| 487-632, gnl|oryCun1|scaffold_204270 (5772-5661) | |
| 487-632, gnl|oryCun1|scaffold_204270 (5789-5662) | |
| 487-632, gnl|panTro1|chr7 (141760870-141760982) | |
| 487-632, gnl|panTro1|chr8 (105669499-105669626) | |
| 487-632, gnl|rheMac2|chr8 (140207063-140207175) | |
| 487-632, gnl|rheMac2|chr9 (101818907-101819034) | |
| 487-632, gnl|rn3|chr1 (251564642-251564752) | |
| 487-632, gnl|rn3|chr1 (251564626-251564753) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 198-369, gnl|bosTau2|chr26 (15316138-15316309) | |
| 198-369, gnl|canFam2|chr28 (17693147-17693308) | |
| 198-369, gnl|canFam2|chr28 (17693135-17693318) | |
| 198-369, gnl|canFam2|chr28 (17693312-17693206) | |
| 198-369, gnl|danRer3|chr13 (21727823-21727922) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38437-38279) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38440-38280) | |
| 198-369, gnl|dasNov1|scaffold_30464 (38270-38378) | |
| 198-369, gnl|echTel1|scaffold_294327 (36257-36422) | |
| 198-369, gnl|echTel1|scaffold_294327 (36245-36428) | |
| 198-369, gnl|echTel1|scaffold_294327 (36423-36316) | |
| 198-369, gnl|fr1|chrUn (213499158-213499011) | |
| 198-369, gnl|fr1|chrUn (213497839-213497905) | |
| 198-369, gnl|galGal2|chr6 (15999357-15999536) | |
| 198-369, gnl|hg17|chr10 (103907788-103907971) | |
| 198-369, gnl|Hg17|chr10 (103907793-103907964) | |
| 198-369, gnl|hg17|chr8 (138778598-138778760) | |
| 198-369, gnl|hg17|chrX (8759695-8759806) | |
| 198-369, gnl|mm7|chr19 (45976537-45976724) | |
| 198-369, gnl|Mm7|chr19 (45976542-45976722) | |
| 198-369, gnl|mm7|chrX (19794549-19794711) | |
| 198-369, gnl|mm7|chrX (19794711-19794606) | |
| 198-369, gnl|monDom2|scaffold_14 (61261238-61260947) | |
| 198-369, gnl|monDom2|scaffold_14 (61256217-61256301) | |
| 198-369, gnl|monDom2|scaffold_26 (41019864-41019659) | |
| 198-369, gnl|oryCun1|scaffold_204270 (7043-6878) | |
| 198-369, gnl|oryCun1|scaffold_204270 (7057-6874) | |
| 198-369, gnl|oryCun1|scaffold_204270 (6878-6986) | |
| 198-369, gnl|panTro1|chr7 (141760602-141760764) | |
| 198-369, gnl|panTro1|chr8 (105668117-105668300) | |
| 198-369, gnl|panTro1|chrX (9027689-9027800) | |
| 198-369, gnl|rheMac2|chr8 (140206797-140206957) | |
| 198-369, gnl|rheMac2|chr9 (101817554-101817737) | |
| 198-369, gnl|rheMac2|chrX (6572850-6572958) | |
| 198-369, gnl|rn3|chr1 (251562208-251562385) | |
| 198-369, gnl|rn3|chr1 (251562196-251562384) | |
| 198-369, gnl|rn3|chr1 (251562385-251562265) | |
| 198-369, gnl|tetNig1|chr17 (3083744-3083637) | |
| 487-632, gnl|bosTau2|chr26 (15318284-15318429) | |
| 487-632, gnl|canFam2|chr28 (17694520-17694641) | |
| 487-632, gnl|canFam2|chr28 (17694504-17694640) | |
| 487-632, gnl|danRer3|chr13 (21734426-21734308) | |
| 487-632, gnl|dasNov1|scaffold_45634 (8573-8678) | |
| 487-632, gnl|dasNov1|scaffold_45634 (8557-8684) | |
| 487-632, gnl|echTel1|scaffold_294327 (37192-37303) | |
| 487-632, gnl|echTel1|scaffold_294327 (37173-37302) | |
| 487-632, gnl|galGal2|chr6 (16001710-16001803) | |
| 487-632, gnl|hg17|chr10 (103909165-103909292) | |
| 487-632, gnl|Hg17|chr10 (103909178-103909317) | |
| 487-632, gnl|hg17|chr8 (138778869-138778981) | |
| 487-632, gnl|loxAfr1|scaffold_12349 (37994-38105) | |
| 487-632, gnl|loxAfr1|scaffold_12349 (37977-38104) | |
| 487-632, gnl|mm7|chr19 (45978160-45978287) | |
| 487-632, gnl|Mm7|chr19 (45978173-45978312) | |
| 487-632, gnl|mm7|chrX (19794850-19794960) | |
| 487-632, gnl|monDom2|scaffold_14 (61260047-61259929) | |
| 487-632, gnl|monDom2|scaffold_26 (41019544-41019381) | |
| 487-632, gnl|oryCun1|scaffold_204270 (5772-5661) | |
| 487-632, gnl|oryCun1|scaffold_204270 (5789-5662) | |
| 487-632, gnl|panTro1|chr7 (141760870-141760982) | |
| 487-632, gnl|panTro1|chr8 (105669499-105669626) | |
| 487-632, gnl|rheMac2|chr8 (140207063-140207175) | |
| 487-632, gnl|rheMac2|chr9 (101818907-101819034) | |
| 487-632, gnl|rn3|chr1 (251564642-251564752) | |
| 487-632, gnl|rn3|chr1 (251564626-251564753) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| eep (0.122564) | |
| ecc (0.115035) |