Non-Coding RNA Search

Ss1.1-recc2831c_o24.5

Sequence:


               
               ACAAATATAACACATTGATAACTTTTCCTTATAAGACAAGAGTAATGCATGGTCTGGGGA
ATTATCTGCTTTTCCATTTTTTAAAAAAAATCAGGACTACGGTTTTGATTCCAGTTCACT
GAGCAGCTACGATAGGATCGGTCGAAGTCGGCGGCCCCTCGCCATCCGGGCCTTTTCGGT
TTGGAACACCCCCCTTCCAGAAAGGCGTTGGGCAGCGTAAGACTGTTTTTTAAATGGTTC
CGAATTGAATTACCTTTTTGGAGAATTTCGTGATGCCCTGGGAAGACATTGGACACTGCT
GGGTGTCCCGGGCCCGAGGGCTGGGAGTTGCTGGTCTGACGCCACGTCAGACTCAGACCC
CCACATTTTTCTCAGTTGGGTGGATGAAACCACTAAAGCTTAGAAACTGTTTTCTCATGC
AGCTAAGTTTCTCTTATTTATGCCTTGAGGACTAACTTCTGGTTTTCTAGCTGTTAATGC
ACTGTAGATCTTAATAATGGTGCCTTATGCAAGCGGCCCCTTATGCGGGGGTCTTATACA
GGGGTATGGGTGATGCATGCTTTATTAAGGCTCTTTTTTCACCTGGCTTTGTACTGTATC
GATAAATAACACAGAAAAAAATCTCTTTGAGGTCCTCCTTCACAAAGTCACGTAAACGAA
AACCCCCCAAACGAGTCAGTATTTACTCCATAGTTTAGGCAACTTGACTGTCAGTGTTAC
AGTGGAAAACACGTGATAATTGGAAAATCAGACCATTTCTGCCACCGTGAGACTTTCATA
TAGACTTTGCACAACGATTGTATAGCTCATACACCGGCTGTGTTTAATATGTAACATTTT
CACATGTATAAAAGATACAGACGTTTAAAAACAATGTATTTGCTTAAAAGGCACAAGTTT
CTCGCATATCTATGTAGCTATCTGTTGGTAACAGAAAGTCTATTACTCTTTTCCTAAACT
GGGCGAAATTCTTGTGTATGTGTATTTGTGCGTATACTATGTGTATGTGTGTGTGTGTGT
GTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATATAACACATTGATAACTTTTCCTTATAAGACAAGAGTAATGCATGGTCTGGGGA
ATTATCTGCTTTTCCATTTTTTAAAAAAAATCAGGACTACGGTTTTGATTCCAGTTCACT
GAGCAGCTACGATAGGATCGGTCGAAGTCGGCGGCCCCTCGCCATCCGGGCCTTTTCGGT
TTGGAACACCCCCCTTCCAGAAAGGCGTTGGGCAGCGTAAGACTGTTTTTTAAATGGTTC
CGAATTGAATTACCTTTTTGGAGAATTTCGTGATGCCCTGGGAAGACATTGGACACTGCT
GGGTGTCCCGGGCCCGAGGGCTGGGAGTTGCTGGTCTGACGCCACGTCAGACTCAGACCC
CCACATTTTTCTCAGTTGGGTGGATGAAACCACTAAAGCTTAGAAACTGTTTTCTCATGC
AGCTAAGTTTCTCTTATTTATGCCTTGAGGACTAACTTCTGGTTTTCTAGCTGTTAATGC
ACTGTAGATCTTAATAATGGTGCCTTATGCAAGCGGCCCCTTATGCGGGGGTCTTATACA
GGGGTATGGGTGATGCATGCTTTATTAAGGCTCTTTTTTCACCTGGCTTTGTACTGTATC
GATAAATAACACAGAAAAAAATCTCTTTGAGGTCCTCCTTCACAAAGTCACGTAAACGAA
AACCCCCCAAACGAGTCAGTATTTACTCCATAGTTTAGGCAACTTGACTGTCAGTGTTAC
AGTGGAAAACACGTGATAATTGGAAAATCAGACCATTTCTGCCACCGTGAGACTTTCATA
TAGACTTTGCACAACGATTGTATAGCTCATACACCGGCTGTGTTTAATATGTAACATTTT
CACATGTATAAAAGATACAGACGTTTAAAAACAATGTATTTGCTTAAAAGGCACAAGTTT
CTCGCATATCTATGTAGCTATCTGTTGGTAACAGAAAGTCTATTACTCTTTTCCTAAACT
GGGCGAAATTCTTGTGTATGTGTATTTGTGCGTATACTATGTGTATGTGTGTGTGTGTGT
GTGTGTGTGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               258-371, + strand, RNAz p=0.966532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-371, + strand, RNAz p=0.966532

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-173, gnl|bosTau2|chr13 (29621878-29621709)
               

               
               1-173, gnl|Hg17|chr10 (3811006-3810837)
               

               
               1-173, gnl|Mm7|chr13 (5753039-5753212)
               


               
               180-1016, gnl|bosTau2|chr13 (29621660-29620804)
               

               
               180-1016, gnl|Hg17|chr10 (3810806-3809960)
               

               
               180-1016, gnl|Mm7|chr13 (5753256-5754200)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-173, gnl|bosTau2|chr13 (29621878-29621709)
               

               
               1-173, gnl|Hg17|chr10 (3811006-3810837)
               

               
               1-173, gnl|Mm7|chr13 (5753039-5753212)
               


               
               180-1016, gnl|bosTau2|chr13 (29621660-29620804)
               

               
               180-1016, gnl|Hg17|chr10 (3810806-3809960)
               

               
               180-1016, gnl|Mm7|chr13 (5753256-5754200)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-173, gnl\|bosTau2\|chr13 (29621878-29621709)
	1-173, gnl\|Hg17\|chr10 (3811006-3810837)
	1-173, gnl\|Mm7\|chr13 (5753039-5753212)

	180-1016, gnl\|bosTau2\|chr13 (29621660-29620804)
	180-1016, gnl\|Hg17\|chr10 (3810806-3809960)
	180-1016, gnl\|Mm7\|chr13 (5753256-5754200)

	ecc (0.23007)
	cbl (0.229595)
	hea (0.204499)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	lun (0.150489)
	ebs (0.118301)
	ldo (0.0970026)