Non-Coding RNA Search

Ss1.1-recc2831c_o5.5

Sequence:


               
               TGGGATTGGGAATTGGTTACATTAGATTTTCCTAAGGAGGACTATAGATGAGATTAAATT
TTTTTGCCATTTACAAAAAAAAAAAAAAAGAAAAAAATTCAGACCCTGCAAAACCACATT
CCCCATTTTAACGGGCGTTGCTCTCACTCTCTCTCTCTCTTACTCTTACTGACATCGTGT
CGGACTAGTGCCTGTTTATTCTTACTCCATCAGGGGCCCCCTTCCTCCCCCCGTGTCAAC
TTTCAGTGCTGGCCAACACCTGGCCATCTCTTCTATTCATAGTACACGTCACAGTGTTGA
TGTGATTCAAAATGTTTCAGTGAAAACTTTGGAGACAGTTTTAACAAAACCAATAAACCA
ACAACAACAACAAAAAAAGTGGATGTATATTGCTTTAAGCAATCACTCATTACCACCAAT
CTGTGAAAGTAAAGCAAAAAAATAATAATAATAATAAATGCCAAGGGGGAGAGAGACACA
ATATCCGCAGCCTTACACCTTAACTAGCTGCTGCATTATTTTATTTTATTTTATTTTTTG
GGTATTTATTCATCAGGAATAAAAAAAACAAAGTTTTATTAAAGATTGAAAATTTGATAC
ATTTTACAGAAACTAATTGTGATGTACATATCAGTGGTGACATATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATTGGGAATTGGTTACATTAGATTTTCCTAAGGAGGACTATAGATGAGATTAAATT
TTTTTGCCATTTACAAAAAAAAAAAAAAAGAAAAAAATTCAGACCCTGCAAAACCACATT
CCCCATTTTAACGGGCGTTGCTCTCACTCTCTCTCTCTCTTACTCTTACTGACATCGTGT
CGGACTAGTGCCTGTTTATTCTTACTCCATCAGGGGCCCCCTTCCTCCCCCCGTGTCAAC
TTTCAGTGCTGGCCAACACCTGGCCATCTCTTCTATTCATAGTACACGTCACAGTGTTGA
TGTGATTCAAAATGTTTCAGTGAAAACTTTGGAGACAGTTTTAACAAAACCAATAAACCA
ACAACAACAACAAAAAAAGTGGATGTATATTGCTTTAAGCAATCACTCATTACCACCAAT
CTGTGAAAGTAAAGCAAAAAAATAATAATAATAATAAATGCCAAGGGGGAGAGAGACACA
ATATCCGCAGCCTTACACCTTAACTAGCTGCTGCATTATTTTATTTTATTTTATTTTTTG
GGTATTTATTCATCAGGAATAAAAAAAACAAAGTTTTATTAAAGATTGAAAATTTGATAC
ATTTTACAGAAACTAATTGTGATGTACATATCAGTGGTGACATATTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               377-474, - strand, RNAz p=0.714686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-474, - strand, RNAz p=0.714686

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               377-648, gnl|bosTau2|chr17 (32112291-32112563)
               

               
               377-648, gnl|Hg17|chr12 (117051193-117050926)
               

               
               377-648, gnl|Mm7|chr5 (116504030-116504321)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-648, gnl|bosTau2|chr17 (32112291-32112563)
               

               
               377-648, gnl|Hg17|chr12 (117051193-117050926)
               

               
               377-648, gnl|Mm7|chr5 (116504030-116504321)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	377-648, gnl\|bosTau2\|chr17 (32112291-32112563)
	377-648, gnl\|Hg17\|chr12 (117051193-117050926)
	377-648, gnl\|Mm7\|chr5 (116504030-116504321)