Non-Coding RNA Search

Ss1.1-recc2833c_c15.5

Sequence:


               
               CGCTGCTGCGCTGCAGGGACCTGGCCTCATCGCTGCGCCTGCTGCGGGCTGAGCACCTCA
ACACGGGCCTGGAGCTGCTGCGGCGGATCCAGGAGAGGATGCTCGCCATCCTGCAGCACT
CCACCCAGGACTTCAGGGTTGGCCTCCAGAGTCCATCGCTAGAGGCCCGGGAGGTGAAAG
GATCCAACGTTCCCGGCAGTCAGCCACAGGGCTCCTCGGGGCTGGAGGGGGATGAGGAAG
AGGAAGACGACGAGGAGGATGACGTGCCCGAGTGGCAGCAGGATGAGTTTGAGGAGGAGC
TGGACAATGACAGCTTCTCCTATGATGAGGAGTCTGAAAACCTGGACCGAGAGACTTTCT
TCTTCGGCGACGAGGAAGAAGATGATGAGGCCTATGACTGAGGGGCAGGGGGCAGGAAGG
ATGCAGGGGGAGTCTCTGCTAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGCTGCGCTGCAGGGACCTGGCCTCATCGCTGCGCCTGCTGCGGGCTGAGCACCTCA
ACACGGGCCTGGAGCTGCTGCGGCGGATCCAGGAGAGGATGCTCGCCATCCTGCAGCACT
CCACCCAGGACTTCAGGGTTGGCCTCCAGAGTCCATCGCTAGAGGCCCGGGAGGTGAAAG
GATCCAACGTTCCCGGCAGTCAGCCACAGGGCTCCTCGGGGCTGGAGGGGGATGAGGAAG
AGGAAGACGACGAGGAGGATGACGTGCCCGAGTGGCAGCAGGATGAGTTTGAGGAGGAGC
TGGACAATGACAGCTTCTCCTATGATGAGGAGTCTGAAAACCTGGACCGAGAGACTTTCT
TCTTCGGCGACGAGGAAGAAGATGATGAGGCCTATGACTGAGGGGCAGGGGGCAGGAAGG
ATGCAGGGGGAGTCTCTGCTAGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-351, + strand, RNAz p=0.723085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-351, + strand, RNAz p=0.723085

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK128364, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK128364, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-129, gnl|bosTau2|chr23 (13228863-13228991)
               

               
               1-129, gnl|canFam2|chr12 (14716980-14717126)
               

               
               1-129, gnl|danRer3|chr22 (35905792-35905649)
               

               
               1-129, gnl|fr1|chrUn (139378401-139378547)
               

               
               1-129, gnl|galGal2|chr3 (4278495-4278649)
               

               
               1-129, gnl|hg17|chr6 (43298971-43299117)
               

               
               1-129, gnl|Hg17|chr6 (43298986-43299114)
               

               
               1-129, gnl|loxAfr1|scaffold_24840 (41194-41342)
               

               
               1-129, gnl|mm7|chr17 (44630626-44630483)
               

               
               1-129, gnl|Mm7|chr17 (44630612-44630484)
               

               
               1-129, gnl|monDom2|scaffold_0 (198413229-198413083)
               

               
               1-129, gnl|oryCun1|scaffold_139077 (7447-7589)
               

               
               1-129, gnl|panTro1|chr5_random (27882534-27882388)
               

               
               1-129, gnl|rheMac2|chr4 (43113921-43114067)
               

               
               1-129, gnl|rn3|chr9 (9859394-9859537)
               

               
               1-129, gnl|tetNig1|chr17 (7793064-7793210)
               

               
               1-129, gnl|xenTro1|scaffold_1226 (149289-149143)
               


               
               236-426, gnl|bosTau2|chr23 (13229818-13230011)
               

               
               236-426, gnl|Hg17|chr6 (43299981-43300179)
               

               
               236-426, gnl|Mm7|chr17 (44629647-44629431)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-129, gnl|bosTau2|chr23 (13228863-13228991)
               

               
               1-129, gnl|canFam2|chr12 (14716980-14717126)
               

               
               1-129, gnl|danRer3|chr22 (35905792-35905649)
               

               
               1-129, gnl|fr1|chrUn (139378401-139378547)
               

               
               1-129, gnl|galGal2|chr3 (4278495-4278649)
               

               
               1-129, gnl|hg17|chr6 (43298971-43299117)
               

               
               1-129, gnl|Hg17|chr6 (43298986-43299114)
               

               
               1-129, gnl|loxAfr1|scaffold_24840 (41194-41342)
               

               
               1-129, gnl|mm7|chr17 (44630626-44630483)
               

               
               1-129, gnl|Mm7|chr17 (44630612-44630484)
               

               
               1-129, gnl|monDom2|scaffold_0 (198413229-198413083)
               

               
               1-129, gnl|oryCun1|scaffold_139077 (7447-7589)
               

               
               1-129, gnl|panTro1|chr5_random (27882534-27882388)
               

               
               1-129, gnl|rheMac2|chr4 (43113921-43114067)
               

               
               1-129, gnl|rn3|chr9 (9859394-9859537)
               

               
               1-129, gnl|tetNig1|chr17 (7793064-7793210)
               

               
               1-129, gnl|xenTro1|scaffold_1226 (149289-149143)
               


               
               236-426, gnl|bosTau2|chr23 (13229818-13230011)
               

               
               236-426, gnl|Hg17|chr6 (43299981-43300179)
               

               
               236-426, gnl|Mm7|chr17 (44629647-44629431)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-129, gnl\|bosTau2\|chr23 (13228863-13228991)
	1-129, gnl\|canFam2\|chr12 (14716980-14717126)
	1-129, gnl\|danRer3\|chr22 (35905792-35905649)
	1-129, gnl\|fr1\|chrUn (139378401-139378547)
	1-129, gnl\|galGal2\|chr3 (4278495-4278649)
	1-129, gnl\|hg17\|chr6 (43298971-43299117)
	1-129, gnl\|Hg17\|chr6 (43298986-43299114)
	1-129, gnl\|loxAfr1\|scaffold_24840 (41194-41342)
	1-129, gnl\|mm7\|chr17 (44630626-44630483)
	1-129, gnl\|Mm7\|chr17 (44630612-44630484)
	1-129, gnl\|monDom2\|scaffold_0 (198413229-198413083)
	1-129, gnl\|oryCun1\|scaffold_139077 (7447-7589)
	1-129, gnl\|panTro1\|chr5_random (27882534-27882388)
	1-129, gnl\|rheMac2\|chr4 (43113921-43114067)
	1-129, gnl\|rn3\|chr9 (9859394-9859537)
	1-129, gnl\|tetNig1\|chr17 (7793064-7793210)
	1-129, gnl\|xenTro1\|scaffold_1226 (149289-149143)

	236-426, gnl\|bosTau2\|chr23 (13229818-13230011)
	236-426, gnl\|Hg17\|chr6 (43299981-43300179)
	236-426, gnl\|Mm7\|chr17 (44629647-44629431)