Non-Coding RNA Search

Ss1.1-recc2833c_f15.5

Sequence:


               
               ATCCCCAGATGCCAAGATGGATAAAAACTGTGTAACCACAACGGTGAAAGTCTCGGCTGT
TAATTCCGTGCTCCCGAAAAACAGTGTTTTGGGTGGGGTCCTCAAAGCAAAGAAACAGCT
GAAGGCAGGGAAGCACTTCGAGCTGCCTAACGGTGCGCTGACAGACGGCCTGGGTGAGGA
GCCCCTTCCGTCCTTGCGGCGGGGCCGCAAGAGGCGCTGCAAGACCAAGCACTTGGAGCA
GAACGGCTCCTTTAAGAAACTGCGGCAAAGCGGTGGGGAGGTGGGTCTGGCCCCAGCCGA
CCCGGTGCTGCGGGAGATGGAGCAGAAGCTGCAGCAAGAGGAAGAGGACCGGCAGCTGGC
GCTGCAGTTGCAGCGCATGTTTGACAACGAGCGGCGGACTGTGAGTCGGCGAAAAGGAAG
CGTGGATCAGTATCTCCTGCGGTCCAGCAACGTGGCCGGGGCCAAGTAGCTCCCGAGGAA
CAGTGTTGGCTACTTTTCAGAGGTCTTGGGGGTTGGTCCTTTACCCTGAAGAGCAAGGTG
TTCTCACTTGGGGTTTCTTTGGCTGGCAAGATACTGTCTGATATGATTCTGAGAGGTTCC
AGGGCCTTGTAGTATATATTCAAGGGACTGCATCCCTGCCTCCCTGTGACCCAGGCCAGA
AGCACTTCTCACCCCTAATGACCCACCCCTTAGAGCTTCTGGGCCAAATCTGGCAGCACC
TGCTTGGAATGAAATTCAGGAGCGCAATGGCCAGGGTTAGACGTGGTAGAGAAAGAGGGG
TTACCTTCTCAAACGGAGAGCCCTCCTGACCTCCTCAGCAGGTGTTGTTTTAAATCAGCC
TTGCAGATAAGAATTAGTTCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCCAGATGCCAAGATGGATAAAAACTGTGTAACCACAACGGTGAAAGTCTCGGCTGT
TAATTCCGTGCTCCCGAAAAACAGTGTTTTGGGTGGGGTCCTCAAAGCAAAGAAACAGCT
GAAGGCAGGGAAGCACTTCGAGCTGCCTAACGGTGCGCTGACAGACGGCCTGGGTGAGGA
GCCCCTTCCGTCCTTGCGGCGGGGCCGCAAGAGGCGCTGCAAGACCAAGCACTTGGAGCA
GAACGGCTCCTTTAAGAAACTGCGGCAAAGCGGTGGGGAGGTGGGTCTGGCCCCAGCCGA
CCCGGTGCTGCGGGAGATGGAGCAGAAGCTGCAGCAAGAGGAAGAGGACCGGCAGCTGGC
GCTGCAGTTGCAGCGCATGTTTGACAACGAGCGGCGGACTGTGAGTCGGCGAAAAGGAAG
CGTGGATCAGTATCTCCTGCGGTCCAGCAACGTGGCCGGGGCCAAGTAGCTCCCGAGGAA
CAGTGTTGGCTACTTTTCAGAGGTCTTGGGGGTTGGTCCTTTACCCTGAAGAGCAAGGTG
TTCTCACTTGGGGTTTCTTTGGCTGGCAAGATACTGTCTGATATGATTCTGAGAGGTTCC
AGGGCCTTGTAGTATATATTCAAGGGACTGCATCCCTGCCTCCCTGTGACCCAGGCCAGA
AGCACTTCTCACCCCTAATGACCCACCCCTTAGAGCTTCTGGGCCAAATCTGGCAGCACC
TGCTTGGAATGAAATTCAGGAGCGCAATGGCCAGGGTTAGACGTGGTAGAGAAAGAGGGG
TTACCTTCTCAAACGGAGAGCCCTCCTGACCTCCTCAGCAGGTGTTGTTTTAAATCAGCC
TTGCAGATAAGAATTAGTTCCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               593-706, + strand, RNAz p=0.769045

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-706, + strand, RNAz p=0.769045

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr8 (11572641-11573511)
               

               
               1-864, gnl|Hg17|chr11 (74224955-74225817)
               

               
               1-864, gnl|Mm7|chr7 (95956564-95955683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr8 (11572641-11573511)
               

               
               1-864, gnl|Hg17|chr11 (74224955-74225817)
               

               
               1-864, gnl|Mm7|chr7 (95956564-95955683)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-864, gnl\|bosTau2\|chr8 (11572641-11573511)
	1-864, gnl\|Hg17\|chr11 (74224955-74225817)
	1-864, gnl\|Mm7\|chr7 (95956564-95955683)

	elu (0.385356)
	mcp (0.170648)
	lnt (0.142308)
	cov (0.132153)
	ebs (0.118301)
	ecc (0.115035)