Ss1.1-recc2833c_l2.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTACACAAACCCAAATCTCAGTGGACAAGGTGACCCTGGCAGCAACCCTAACAAACGCC AGAGGCAGCCCCCTCTCCTGGGAGATCACCCCGCAGAATATGGAGGGCCCCACGGTGGGT ACCACAGCCATTACCATGATGAGGGCTACGGGCCCCCCCCACCTCACTACGAAGGGAGAA GGATGGGCCCACCAGTGGGGGGTCACCGCCGGGGCCCAAGTCGCTACGGCCCCCAGTATG GGCACCCCCCACCCCCTCCCCCACCACCCGAGTATGGCCCCCACGCCGACAGCCCTGTGC TCATGGTCTATGGCTTGGATCAATCTAAGATGAACTGTGACCGGGTCTTCAATGTCTTCT GCTTGTATGGCAATGTGGAGAAGGTGAAATTCATGAAAAGCAAGCCGGGGGCCGCCATGG TGGAGATGGCTGATGGCTATGCTGTGGACCGGGCCATTACCCACCTCAACAACAACTTCA TGTTTGGGCAGAAGCTGAATGTCTGTGTCTCCAAGCAACCAGCCATCATGCCTGGTCAGT CATATGGGCTGGAAGATGGGTCCTGCAGTTATAAAGACTTCAGTGAATCGAGGAACAATC GGTTCTCCACTCCAGAGCAGGCAGCCAAGAACCGCATCCAGCACCCTAGCAACGTGCTGC ACTTCTTCAATGCCCCTCTGGAGGTGACCGAAGAGAATTTCTTCGAGATCTGTGATGAGC TGGGAGTGAAGCGGCCGTCTTCTGTGAAAGTATTCTCAGGCAAAAGTGAACGCAGCTCCT CTGGGCTGCTGGAGTGGGAGTCCAAAAGTGATGCCCTGGAGACTTTGGGCTTCCTGAACC ATTACCAGATGAAAAACCCAAATGGGCCGTACCCTTACACCCTGAAGTTGTGTTTCTCCA CCGCTCAGCACGCCTCCTAATTAGGTGCCTATGAAGAGTCCCATCTGAGCAGGAAAACAT TTCTCTTTCCTTTATGCTGTTTTTCTCTTTCCTTTTTTCTTCCTTTTTTTTTTTTTTTTT GGCAAATGTTCCTGTACTCTTTTTTTTTTTTTTCTCCTTTCTTTTAATTCTAGGTTAGTA GAGACTTAACCATAATGGAAACTCTGGAAGTCTAAAGGGGGAGGGGAAGGGGAACTGATA TCTCCCAAGATTAACCTTCACTTTTTAAAGAATTACTGTACATGTGATTTTTTTTTTTCT TCCTGTTCATACATTTGTGCTGCCCATGTACTCTTGGCATATTTCAATAAAATTGTTTGG AAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTACACAAACCCAAATCTCAGTGGACAAGGTGACCCTGGCAGCAACCCTAACAAACGCC AGAGGCAGCCCCCTCTCCTGGGAGATCACCCCGCAGAATATGGAGGGCCCCACGGTGGGT ACCACAGCCATTACCATGATGAGGGCTACGGGCCCCCCCCACCTCACTACGAAGGGAGAA GGATGGGCCCACCAGTGGGGGGTCACCGCCGGGGCCCAAGTCGCTACGGCCCCCAGTATG GGCACCCCCCACCCCCTCCCCCACCACCCGAGTATGGCCCCCACGCCGACAGCCCTGTGC TCATGGTCTATGGCTTGGATCAATCTAAGATGAACTGTGACCGGGTCTTCAATGTCTTCT GCTTGTATGGCAATGTGGAGAAGGTGAAATTCATGAAAAGCAAGCCGGGGGCCGCCATGG TGGAGATGGCTGATGGCTATGCTGTGGACCGGGCCATTACCCACCTCAACAACAACTTCA TGTTTGGGCAGAAGCTGAATGTCTGTGTCTCCAAGCAACCAGCCATCATGCCTGGTCAGT CATATGGGCTGGAAGATGGGTCCTGCAGTTATAAAGACTTCAGTGAATCGAGGAACAATC GGTTCTCCACTCCAGAGCAGGCAGCCAAGAACCGCATCCAGCACCCTAGCAACGTGCTGC ACTTCTTCAATGCCCCTCTGGAGGTGACCGAAGAGAATTTCTTCGAGATCTGTGATGAGC TGGGAGTGAAGCGGCCGTCTTCTGTGAAAGTATTCTCAGGCAAAAGTGAACGCAGCTCCT CTGGGCTGCTGGAGTGGGAGTCCAAAAGTGATGCCCTGGAGACTTTGGGCTTCCTGAACC ATTACCAGATGAAAAACCCAAATGGGCCGTACCCTTACACCCTGAAGTTGTGTTTCTCCA CCGCTCAGCACGCCTCCTAATTAGGTGCCTATGAAGAGTCCCATCTGAGCAGGAAAACAT TTCTCTTTCCTTTATGCTGTTTTTCTCTTTCCTTTTTTCTTCCTTTTTTTTTTTTTTTTT GGCAAATGTTCCTGTACTCTTTTTTTTTTTTTTCTCCTTTCTTTTAATTCTAGGTTAGTA GAGACTTAACCATAATGGAAACTCTGGAAGTCTAAAGGGGGAGGGGAAGGGGAACTGATA TCTCCCAAGATTAACCTTCACTTTTTAAAGAATTACTGTACATGTGATTTTTTTTTTTCT TCCTGTTCATACATTTGTGCTGCCCATGTACTCTTGGCATATTTCAATAAAATTGTTTGG AAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 102-260, - strand, RNAz p=0.983306 | |
| 584-717, - strand, RNAz p=0.653404 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 102-260, - strand, RNAz p=0.983306 | |
| 584-717, - strand, RNAz p=0.653404 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 102-392, gnl|bosTau2|chr18 (42179998-42180288) | |
| 102-392, gnl|Hg17|chr19 (44022857-44022567) | |
| 102-392, gnl|Mm7|chr7 (25752534-25752822) | |
| 505-717, gnl|bosTau2|chr18 (42181522-42181734) | |
| 505-717, gnl|canFam2|chr1 (117187229-117187079) | |
| 505-717, gnl|canFam2|chr1 (117187205-117187004) | |
| 505-717, gnl|danRer3|chr5 (40868295-40868167) | |
| 505-717, gnl|danRer3|chr5 (40868293-40868094) | |
| 505-717, gnl|dasNov1|scaffold_50411 (9030-8880) | |
| 505-717, gnl|dasNov1|scaffold_50411 (9006-8805) | |
| 505-717, gnl|echTel1|scaffold_224764 (5582-5729) | |
| 505-717, gnl|echTel1|scaffold_224764 (5603-5804) | |
| 505-717, gnl|fr1|chrUn (98432211-98432062) | |
| 505-717, gnl|fr1|chrUn (98432188-98431989) | |
| 505-717, gnl|hg17|chr19 (44020854-44021004) | |
| 505-717, gnl|Hg17|chr19 (44021079-44020867) | |
| 505-717, gnl|hg17|chr6 (7426539-7426736) | |
| 505-717, gnl|mm7|chr7 (25754662-25754512) | |
| 505-717, gnl|mm7|chr7 (25754636-25754437) | |
| 505-717, gnl|Mm7|chr7 (25754435-25754647) | |
| 505-717, gnl|monDom2|scaffold_139 (811529-811679) | |
| 505-717, gnl|monDom2|scaffold_139 (811553-811754) | |
| 505-717, gnl|oryCun1|scaffold_173353 (48012-47862) | |
| 505-717, gnl|oryCun1|scaffold_173353 (47986-47787) | |
| 505-717, gnl|panTro1|chr20 (40954614-40954764) | |
| 505-717, gnl|panTro1|chr5 (7802629-7802826) | |
| 505-717, gnl|rheMac2|chr19 (45176305-45176455) | |
| 505-717, gnl|rheMac2|chr4 (7388217-7388400) | |
| 505-717, gnl|rn3|chr1 (84006300-84006150) | |
| 505-717, gnl|rn3|chr3 (1378896-1378697) | |
| 505-717, gnl|tetNig1|chr16 (6816772-6816640) | |
| 505-717, gnl|tetNig1|chr16 (6816766-6816567) | |
| 505-717, gnl|xenTro1|scaffold_1700 (35069-35198) | |
| 505-717, gnl|xenTro1|scaffold_1700 (35077-35273) | |
| 988-1268, gnl|bosTau2|chr18 (42183336-42183614) | |
| 988-1268, gnl|Hg17|chr19 (44019162-44018875) | |
| 988-1268, gnl|Mm7|chr7 (25755839-25756139) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-392, gnl|bosTau2|chr18 (42179998-42180288) | |
| 102-392, gnl|Hg17|chr19 (44022857-44022567) | |
| 102-392, gnl|Mm7|chr7 (25752534-25752822) | |
| 505-717, gnl|bosTau2|chr18 (42181522-42181734) | |
| 505-717, gnl|canFam2|chr1 (117187229-117187079) | |
| 505-717, gnl|canFam2|chr1 (117187205-117187004) | |
| 505-717, gnl|danRer3|chr5 (40868295-40868167) | |
| 505-717, gnl|danRer3|chr5 (40868293-40868094) | |
| 505-717, gnl|dasNov1|scaffold_50411 (9030-8880) | |
| 505-717, gnl|dasNov1|scaffold_50411 (9006-8805) | |
| 505-717, gnl|echTel1|scaffold_224764 (5582-5729) | |
| 505-717, gnl|echTel1|scaffold_224764 (5603-5804) | |
| 505-717, gnl|fr1|chrUn (98432211-98432062) | |
| 505-717, gnl|fr1|chrUn (98432188-98431989) | |
| 505-717, gnl|hg17|chr19 (44020854-44021004) | |
| 505-717, gnl|Hg17|chr19 (44021079-44020867) | |
| 505-717, gnl|hg17|chr6 (7426539-7426736) | |
| 505-717, gnl|mm7|chr7 (25754662-25754512) | |
| 505-717, gnl|mm7|chr7 (25754636-25754437) | |
| 505-717, gnl|Mm7|chr7 (25754435-25754647) | |
| 505-717, gnl|monDom2|scaffold_139 (811529-811679) | |
| 505-717, gnl|monDom2|scaffold_139 (811553-811754) | |
| 505-717, gnl|oryCun1|scaffold_173353 (48012-47862) | |
| 505-717, gnl|oryCun1|scaffold_173353 (47986-47787) | |
| 505-717, gnl|panTro1|chr20 (40954614-40954764) | |
| 505-717, gnl|panTro1|chr5 (7802629-7802826) | |
| 505-717, gnl|rheMac2|chr19 (45176305-45176455) | |
| 505-717, gnl|rheMac2|chr4 (7388217-7388400) | |
| 505-717, gnl|rn3|chr1 (84006300-84006150) | |
| 505-717, gnl|rn3|chr3 (1378896-1378697) | |
| 505-717, gnl|tetNig1|chr16 (6816772-6816640) | |
| 505-717, gnl|tetNig1|chr16 (6816766-6816567) | |
| 505-717, gnl|xenTro1|scaffold_1700 (35069-35198) | |
| 505-717, gnl|xenTro1|scaffold_1700 (35077-35273) | |
| 988-1268, gnl|bosTau2|chr18 (42183336-42183614) | |
| 988-1268, gnl|Hg17|chr19 (44019162-44018875) | |
| 988-1268, gnl|Mm7|chr7 (25755839-25756139) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| fty (0.703359) | |
| bla (0.497389) | |
| eep (0.490256) | |
| eje (0.395335) | |
| cly (0.361925) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| kid (0.129735) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.703359) | |
| bla (0.497389) | |
| eep (0.490256) | |
| eje (0.395335) | |
| cly (0.361925) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| kid (0.129735) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) |