Non-Coding RNA Search

Ss1.1-recc2833c_n13.5.5

Sequence:


               
               GATCAGCATGTGACTCTCCAGCACCTATCCCATCAGTGTCTCCGCCTCTTGCTCCCTCCC
CAGCTCCCCCTCTGCTTCCTAAACAGCAATTTCCGATGTCCTCACCTGGGCTGGTGCTGG
AATCACCCTGTAAGCCCTCAGCCCGCTAAGGCGAACTGGAGGTTTTATGGGGCCACCGGG
CTCTCGCTCGCTCTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCCGCACAAAATGCCCG
GTGAAGCCACAGAAACCGTTCCTGCTACAGAGCAGGAGTTGCCACAGCCCCAGGCTGAGA
CAGGGTCTGGAACAGAATCTGACAGCGATGAATCAGTACCAGAGCTTGAAGAACAGGATT
CTACACAGGCAACTACACAACAAGCCCAACTGGCAGCAGCAGCTGAAATTGATGAAGAAC
CAGTCAGTAAAGCAAAACAGAGCCGGAGTGAAAAGAAGGCCCGGAAGGCTATGTCCAAAC
TGGGTCTTCGGCAGGTTACAGGGGTTACTAGAGTTACTATCCGGAAATCTAAGAATATCC
TTTTTGTCATCACGAAACCAGATGTCTACAAGAGCCCAGCTTCAGATACCTACATAGTTT
TTGGGGAAGCCAAGATCGAGGACTTATCTCAGCAAGCACAGTTAGCCGCTGCTGAGAAAT
TCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCAACTGTAC
AAGAGGAGAGTGAAGAGGAAGAGGTTGATGAAACAGGTGTGGAAGTTAAGGACATAGAAT
TGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACA
GTAATGATATTGTAAATGCTATTATGGAATTAACAATGTAACCATCTGAAAAGAGGACCC
TTTTTTTGGTGTTTCAAAAGAGTAATAACTGCAGCTTGGTTTGAAATTTGTACTGTTTCT
ATCATTAATAAAGTTATGGCTTCTTGTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCAGCATGTGACTCTCCAGCACCTATCCCATCAGTGTCTCCGCCTCTTGCTCCCTCCC
CAGCTCCCCCTCTGCTTCCTAAACAGCAATTTCCGATGTCCTCACCTGGGCTGGTGCTGG
AATCACCCTGTAAGCCCTCAGCCCGCTAAGGCGAACTGGAGGTTTTATGGGGCCACCGGG
CTCTCGCTCGCTCTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCCGCACAAAATGCCCG
GTGAAGCCACAGAAACCGTTCCTGCTACAGAGCAGGAGTTGCCACAGCCCCAGGCTGAGA
CAGGGTCTGGAACAGAATCTGACAGCGATGAATCAGTACCAGAGCTTGAAGAACAGGATT
CTACACAGGCAACTACACAACAAGCCCAACTGGCAGCAGCAGCTGAAATTGATGAAGAAC
CAGTCAGTAAAGCAAAACAGAGCCGGAGTGAAAAGAAGGCCCGGAAGGCTATGTCCAAAC
TGGGTCTTCGGCAGGTTACAGGGGTTACTAGAGTTACTATCCGGAAATCTAAGAATATCC
TTTTTGTCATCACGAAACCAGATGTCTACAAGAGCCCAGCTTCAGATACCTACATAGTTT
TTGGGGAAGCCAAGATCGAGGACTTATCTCAGCAAGCACAGTTAGCCGCTGCTGAGAAAT
TCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCAACTGTAC
AAGAGGAGAGTGAAGAGGAAGAGGTTGATGAAACAGGTGTGGAAGTTAAGGACATAGAAT
TGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACA
GTAATGATATTGTAAATGCTATTATGGAATTAACAATGTAACCATCTGAAAAGAGGACCC
TTTTTTTGGTGTTTCAAAAGAGTAATAACTGCAGCTTGGTTTGAAATTTGTACTGTTTCT
ATCATTAATAAAGTTATGGCTTCTTGTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q13765_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q13765_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               232-350, - strand, RNAz p=0.981046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-350, - strand, RNAz p=0.981046

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-144, gnl|bosTau2|chr5 (33051216-33051359)
               

               
               1-144, gnl|Hg17|chr12 (55396224-55396081)
               

               
               1-144, gnl|Mm7|chr10 (127546172-127546315)
               


               
               193-1011, gnl|bosTau2|chr5 (33928532-33927717)
               

               
               193-1011, gnl|Hg17|chr4 (166222006-166222806)
               

               
               193-1011, gnl|Mm7|chr4 (52835272-52836072)
               


               
               554-983, gnl|bosTau2|chr20 (32975583-32976015)
               

               
               554-983, gnl|Hg17|chr5 (16245517-16245080)
               

               
               554-983, gnl|Mm7|chr12 (94411956-94411524)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr5 (33051216-33051359)
               

               
               1-144, gnl|Hg17|chr12 (55396224-55396081)
               

               
               1-144, gnl|Mm7|chr10 (127546172-127546315)
               


               
               193-1011, gnl|bosTau2|chr5 (33928532-33927717)
               

               
               193-1011, gnl|Hg17|chr4 (166222006-166222806)
               

               
               193-1011, gnl|Mm7|chr4 (52835272-52836072)
               


               
               554-983, gnl|bosTau2|chr20 (32975583-32976015)
               

               
               554-983, gnl|Hg17|chr5 (16245517-16245080)
               

               
               554-983, gnl|Mm7|chr12 (94411956-94411524)

Expressed library(ies): 86 entry(ies)

More info

Expressed library(ies): 86 entry(ies)

Help | Less info


               
               cbe (3.82775)
               

               
               ova (3.74483)
               

               
               sag (3.6543)
               

               
               elu (3.08285)
               

               
               mgp (2.99885)
               

               
               cmu (2.98229)
               

               
               eje (2.86618)
               

               
               lnt (2.27693)
               

               
               gul (2.13106)
               

               
               nco (2.10254)
               

               
               mcp (2.04778)
               

               
               ecc (1.9556)
               

               
               eru (1.80072)
               

               
               sin (1.74948)
               

               
               rec (1.7307)
               

               
               thg (1.64828)
               

               
               ski (1.61409)
               

               
               spc (1.58712)
               

               
               aor (1.56219)
               

               
               bla (1.49217)
               

               
               tra (1.4771)
               

               
               mga (1.44185)
               

               
               hea (1.43149)
               

               
               fty (1.40672)
               

               
               med (1.39502)
               

               
               pty (1.28443)
               

               
               cst (1.26033)
               

               
               amn (1.25313)
               

               
               tes (1.24688)
               

               
               lyg (1.19792)
               

               
               nmm (1.19522)
               

               
               ebs (1.18301)
               

               
               col (1.17005)
               

               
               nje (1.16144)
               

               
               ece (1.14653)
               

               
               ese (1.13852)
               

               
               eep (1.10308)
               

               
               ill (1.05356)
               

               
               isp (1.05263)
               

               
               lin (1.01922)
               

               
               fcc (0.988924)
               

               
               csk (0.985222)
               

               
               hlv (0.974795)
               

               
               nca (0.958117)
               

               
               mgm (0.901713)
               

               
               nbm (0.893921)
               

               
               cut (0.849618)
               

               
               fhi (0.847889)
               

               
               jej (0.791374)
               

               
               nlu (0.766724)
               

               
               fat (0.737137)
               

               
               nep (0.7357)
               

               
               sto (0.719295)
               

               
               hyp (0.714184)
               

               
               ton (0.702001)
               

               
               eye (0.682012)
               

               
               ute (0.663922)
               

               
               ret (0.643666)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               fli (0.608643)
               

               
               bfe (0.599431)
               

               
               cte (0.58548)
               

               
               spl (0.572738)
               

               
               jca (0.569801)
               

               
               che (0.545256)
               

               
               sug (0.509165)
               

               
               pgl (0.473934)
               

               
               pan (0.471921)
               

               
               cag (0.453583)
               

               
               ssp (0.406559)
               

               
               cov (0.396458)
               

               
               ldo (0.38801)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               cly (0.241284)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)

Expressed library(ies): 86 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (3.82775)
               

               
               ova (3.74483)
               

               
               sag (3.6543)
               

               
               elu (3.08285)
               

               
               mgp (2.99885)
               

               
               cmu (2.98229)
               

               
               eje (2.86618)
               

               
               lnt (2.27693)
               

               
               gul (2.13106)
               

               
               nco (2.10254)
               

               
               mcp (2.04778)
               

               
               ecc (1.9556)
               

               
               eru (1.80072)
               

               
               sin (1.74948)
               

               
               rec (1.7307)
               

               
               thg (1.64828)
               

               
               ski (1.61409)
               

               
               spc (1.58712)
               

               
               aor (1.56219)
               

               
               bla (1.49217)
               

               
               tra (1.4771)
               

               
               mga (1.44185)
               

               
               hea (1.43149)
               

               
               fty (1.40672)
               

               
               med (1.39502)
               

               
               pty (1.28443)
               

               
               cst (1.26033)
               

               
               amn (1.25313)
               

               
               tes (1.24688)
               

               
               lyg (1.19792)
               

               
               nmm (1.19522)
               

               
               ebs (1.18301)
               

               
               col (1.17005)
               

               
               nje (1.16144)
               

               
               ece (1.14653)
               

               
               ese (1.13852)
               

               
               eep (1.10308)
               

               
               ill (1.05356)
               

               
               isp (1.05263)
               

               
               lin (1.01922)
               

               
               fcc (0.988924)
               

               
               csk (0.985222)
               

               
               hlv (0.974795)
               

               
               nca (0.958117)
               

               
               mgm (0.901713)
               

               
               nbm (0.893921)
               

               
               cut (0.849618)
               

               
               fhi (0.847889)
               

               
               jej (0.791374)
               

               
               nlu (0.766724)
               

               
               fat (0.737137)
               

               
               nep (0.7357)
               

               
               sto (0.719295)
               

               
               hyp (0.714184)
               

               
               ton (0.702001)
               

               
               eye (0.682012)
               

               
               ute (0.663922)
               

               
               ret (0.643666)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               fli (0.608643)
               

               
               bfe (0.599431)
               

               
               cte (0.58548)
               

               
               spl (0.572738)
               

               
               jca (0.569801)
               

               
               che (0.545256)
               

               
               sug (0.509165)
               

               
               pgl (0.473934)
               

               
               pan (0.471921)
               

               
               cag (0.453583)
               

               
               ssp (0.406559)
               

               
               cov (0.396458)
               

               
               ldo (0.38801)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               cly (0.241284)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)

	1-144, gnl\|bosTau2\|chr5 (33051216-33051359)
	1-144, gnl\|Hg17\|chr12 (55396224-55396081)
	1-144, gnl\|Mm7\|chr10 (127546172-127546315)

	193-1011, gnl\|bosTau2\|chr5 (33928532-33927717)
	193-1011, gnl\|Hg17\|chr4 (166222006-166222806)
	193-1011, gnl\|Mm7\|chr4 (52835272-52836072)

	554-983, gnl\|bosTau2\|chr20 (32975583-32976015)
	554-983, gnl\|Hg17\|chr5 (16245517-16245080)
	554-983, gnl\|Mm7\|chr12 (94411956-94411524)

	cbe (3.82775)
	ova (3.74483)
	sag (3.6543)
	elu (3.08285)
	mgp (2.99885)
	cmu (2.98229)
	eje (2.86618)
	lnt (2.27693)
	gul (2.13106)
	nco (2.10254)
	mcp (2.04778)
	ecc (1.9556)
	eru (1.80072)
	sin (1.74948)
	rec (1.7307)
	thg (1.64828)
	ski (1.61409)
	spc (1.58712)
	aor (1.56219)
	bla (1.49217)
	tra (1.4771)
	mga (1.44185)
	hea (1.43149)
	fty (1.40672)
	med (1.39502)
	pty (1.28443)
	cst (1.26033)
	amn (1.25313)
	tes (1.24688)
	lyg (1.19792)
	nmm (1.19522)
	ebs (1.18301)
	col (1.17005)
	nje (1.16144)
	ece (1.14653)
	ese (1.13852)
	eep (1.10308)
	ill (1.05356)
	isp (1.05263)
	lin (1.01922)
	fcc (0.988924)
	csk (0.985222)
	hlv (0.974795)
	nca (0.958117)
	mgm (0.901713)
	nbm (0.893921)
	cut (0.849618)
	fhi (0.847889)
	jej (0.791374)
	nlu (0.766724)
	fat (0.737137)
	nep (0.7357)
	sto (0.719295)
	hyp (0.714184)
	ton (0.702001)
	eye (0.682012)
	ute (0.663922)
	ret (0.643666)
	mas (0.630915)
	sme (0.610874)
	fli (0.608643)
	bfe (0.599431)
	cte (0.58548)
	spl (0.572738)
	jca (0.569801)
	che (0.545256)
	sug (0.509165)
	pgl (0.473934)
	pan (0.471921)
	cag (0.453583)
	ssp (0.406559)
	cov (0.396458)
	ldo (0.38801)
	fbs (0.350693)
	vin (0.332557)
	cki (0.330469)
	cje (0.330469)
	lun (0.300978)
	fce (0.271592)
	ste (0.270416)
	kid (0.259471)
	cly (0.241284)
	csp (0.161186)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)