Ss1.1-recc2834c_h1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGGCTGGCGCGCCGGGCGGCTCTGCGAATCCTCCATCCGCCCCGGCGGCGGGTCGCCC CCGCCCGCGGCAGCCCCCCGAGCAGCCCGGCACCGGCGGCGCCTTCCCGGCGGGGAGTGA ACCATGGAGCTTCGTGTGGGGAACAAGTACCGCCTGGGCCGGAAGATCGGGAGCGGATCC TTTGGAGATATCTACCTGGGTGCCAACATTGCCTCTGGTGAAGAAGTTGCTATCAAGCTC GAGTGTGTGAAGACAAAGCACCCCCAGCTGCACATCGAGAGCAAGTTCTACAAGATGATG CAGGGGGGAGTGGGAATCCCGTCCATCAAGTGGTGCGGGGCCGAGGGTGACTACAACGTG ATGGTCATGGAGTTGCTGGGGCCCAGCCTCGAGGACCTCTTCAACTTCTGCTCCCGAAAG TTTAGCCTCAAGACGGTGCTGCTCCTGGCGGACCAGATGATCAGCCGCATCGAGTACATC CACTCCAAGAACTTCATCCACCGGGACGTCAAACCCGACAACTTCCTCATGGGGCTGGGG AAGAAGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCC CGCACCCACCAGCACATCCCCTACCGGGAAAACAAGAACTTGACCGGCACGGCCCGCTAC GCCTCCATCAACACCCACCTGGGCATCGAGCAAAGCCGTCGAGATGACCTGGAGAGTCTG GGTTACGTGCTCATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGCCTCAAGGCGGCC ACCAAGCGCCAGAAGTATGAGCGCATCAGCGAGAAGAAGATGTCGACGCCCATCGAGGTC CTCTGCAAAGGCTACCCCTCTGAGTTCTCAACATACCTCAACTTCTGCCGTTCACTGCGG TTCGATGACAAGCCTGACTACTCCTACCTGCGCCAGCTCTTCCGCAACCTCTTCCACCGG CAGGGCTTCTCCTATGACTACGTCTTCGACTGGAACATGCTCAAATTCGGTGCAGCCCGG AACCCCGAGGACGTGGACCGGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGGCTGGCGCGCCGGGCGGCTCTGCGAATCCTCCATCCGCCCCGGCGGCGGGTCGCCC CCGCCCGCGGCAGCCCCCCGAGCAGCCCGGCACCGGCGGCGCCTTCCCGGCGGGGAGTGA ACCATGGAGCTTCGTGTGGGGAACAAGTACCGCCTGGGCCGGAAGATCGGGAGCGGATCC TTTGGAGATATCTACCTGGGTGCCAACATTGCCTCTGGTGAAGAAGTTGCTATCAAGCTC GAGTGTGTGAAGACAAAGCACCCCCAGCTGCACATCGAGAGCAAGTTCTACAAGATGATG CAGGGGGGAGTGGGAATCCCGTCCATCAAGTGGTGCGGGGCCGAGGGTGACTACAACGTG ATGGTCATGGAGTTGCTGGGGCCCAGCCTCGAGGACCTCTTCAACTTCTGCTCCCGAAAG TTTAGCCTCAAGACGGTGCTGCTCCTGGCGGACCAGATGATCAGCCGCATCGAGTACATC CACTCCAAGAACTTCATCCACCGGGACGTCAAACCCGACAACTTCCTCATGGGGCTGGGG AAGAAGGGCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCC CGCACCCACCAGCACATCCCCTACCGGGAAAACAAGAACTTGACCGGCACGGCCCGCTAC GCCTCCATCAACACCCACCTGGGCATCGAGCAAAGCCGTCGAGATGACCTGGAGAGTCTG GGTTACGTGCTCATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGCCTCAAGGCGGCC ACCAAGCGCCAGAAGTATGAGCGCATCAGCGAGAAGAAGATGTCGACGCCCATCGAGGTC CTCTGCAAAGGCTACCCCTCTGAGTTCTCAACATACCTCAACTTCTGCCGTTCACTGCGG TTCGATGACAAGCCTGACTACTCCTACCTGCGCCAGCTCTTCCGCAACCTCTTCCACCGG CAGGGCTTCTCCTATGACTACGTCTTCGACTGGAACATGCTCAAATTCGGTGCAGCCCGG AACCCCGAGGACGTGGACCGGGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 199-310, gnl|bosTau2|chr19 (44468949-44468838) | |
| 199-310, gnl|canFam2|chr9 (3083403-3083262) | |
| 199-310, gnl|danRer3|chr12 (31400073-31400208) | |
| 199-310, gnl|dasNov1|scaffold_34654 (4110-4248) | |
| 199-310, gnl|echTel1|scaffold_261992 (8895-9026) | |
| 199-310, gnl|fr1|chrUn (167929538-167929409) | |
| 199-310, gnl|galGal2|chr18 (4650471-4650340) | |
| 199-310, gnl|hg17|chr17 (77816838-77816978) | |
| 199-310, gnl|Hg17|chr17 (77816962-77816851) | |
| 199-310, gnl|loxAfr1|scaffold_65184 (4882-4742) | |
| 199-310, gnl|mm7|chr11 (121092274-121092404) | |
| 199-310, gnl|Mm7|chr11 (121092389-121092278) | |
| 199-310, gnl|monDom2|scaffold_18 (16256578-16256729) | |
| 199-310, gnl|oryCun1|scaffold_109586 (3651-3521) | |
| 199-310, gnl|panTro1|chr19 (81589982-81590123) | |
| 199-310, gnl|rheMac2|chr16 (77744539-77744679) | |
| 199-310, gnl|rn3|chr10 (110203537-110203663) | |
| 199-310, gnl|tetNig1|chrUn_random (37838307-37838442) | |
| 199-310, gnl|xenTro1|scaffold_92 (1894757-1894896) | |
| 452-688, gnl|bosTau2|chr19 (44452444-44452208) | |
| 452-688, gnl|canFam2|chr9 (3096646-3096404) | |
| 452-688, gnl|danRer3|chr12 (31399447-31399682) | |
| 452-688, gnl|dasNov1|scaffold_34654 (3745-3971) | |
| 452-688, gnl|echTel1|scaffold_323549 (2414-2168) | |
| 452-688, gnl|fr1|chrUn (167930707-167930468) | |
| 452-688, gnl|galGal2|chr18 (4652780-4652538) | |
| 452-688, gnl|hg17|chr17 (77804177-77804416) | |
| 452-688, gnl|Hg17|chr17 (77804417-77804181) | |
| 452-688, gnl|loxAfr1|scaffold_27359 (27550-27308) | |
| 452-688, gnl|mm7|chr11 (121082007-121082245) | |
| 452-688, gnl|Mm7|chr11 (121082244-121082011) | |
| 452-688, gnl|monDom2|scaffold_18 (16232370-16232608) | |
| 452-688, gnl|oryCun1|scaffold_90015 (331-93) | |
| 452-688, gnl|panTro1|chr19 (81576466-81576705) | |
| 452-688, gnl|rheMac2|chr16 (77733721-77733960) | |
| 452-688, gnl|rn3|chr10 (110192143-110192381) | |
| 452-688, gnl|tetNig1|chrUn_random (37837065-37837304) | |
| 452-688, gnl|xenTro1|scaffold_92 (1892260-1892499) | |
| 465-685, gnl|bosTau2|chr10 (30202523-30202297) | |
| 465-685, gnl|canFam2|chr30 (31702598-31702760) | |
| 465-685, gnl|danRer3|chr7 (53085864-53086033) | |
| 465-685, gnl|dasNov1|scaffold_7616 (39878-39716) | |
| 465-685, gnl|echTel1|scaffold_317194 (43978-43816) | |
| 465-685, gnl|fr1|chrUn (5253000-5252847) | |
| 465-685, gnl|galGal2|chr10 (1383423-1383585) | |
| 465-685, gnl|hg17|chr15 (62293129-62293291) | |
| 465-685, gnl|Hg17|chr15 (62293371-62293145) | |
| 465-685, gnl|loxAfr1|scaffold_4663 (46595-46433) | |
| 465-685, gnl|mm7|chr9 (66031930-66031775) | |
| 465-685, gnl|Mm7|chr9 (66031693-66031919) | |
| 465-685, gnl|monDom2|scaffold_12 (49282514-49282352) | |
| 465-685, gnl|oryCun1|scaffold_145681 (15019-15181) | |
| 465-685, gnl|panTro1|chr16 (62756728-62756890) | |
| 465-685, gnl|rheMac2|chr7 (42612228-42612390) | |
| 465-685, gnl|rn3|chr8 (70294007-70293852) | |
| 465-685, gnl|tetNig1|chr5 (10798575-10798725) | |
| 465-685, gnl|xenTro1|scaffold_295 (306367-306213) | |
| 860-1007, gnl|bosTau2|chr19 (44451250-44451103) | |
| 860-1007, gnl|canFam2|chr9 (3097837-3097734) | |
| 860-1007, gnl|danRer3|chr12 (31395786-31395889) | |
| 860-1007, gnl|dasNov1|scaffold_34654 (3434-3530) | |
| 860-1007, gnl|echTel1|scaffold_314544 (49446-49344) | |
| 860-1007, gnl|fr1|chrUn (167932147-167932044) | |
| 860-1007, gnl|galGal2|chr18 (4654820-4654724) | |
| 860-1007, gnl|hg17|chr17 (77802539-77802642) | |
| 860-1007, gnl|Hg17|chr17 (77802692-77802545) | |
| 860-1007, gnl|loxAfr1|scaffold_27359 (28859-28756) | |
| 860-1007, gnl|mm7|chr11 (121080607-121080710) | |
| 860-1007, gnl|Mm7|chr11 (121080760-121080613) | |
| 860-1007, gnl|monDom2|scaffold_18 (16230544-16230647) | |
| 860-1007, gnl|oryCun1|scaffold_109586 (6790-6686) | |
| 860-1007, gnl|panTro1|chr19 (81574831-81574934) | |
| 860-1007, gnl|rheMac2|chr16 (77732454-77732557) | |
| 860-1007, gnl|rn3|chr10 (110190691-110190795) | |
| 860-1007, gnl|tetNig1|chrUn_random (37836540-37836643) | |
| 860-1007, gnl|xenTro1|scaffold_92 (1887145-1887241) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-310, gnl|bosTau2|chr19 (44468949-44468838) | |
| 199-310, gnl|canFam2|chr9 (3083403-3083262) | |
| 199-310, gnl|danRer3|chr12 (31400073-31400208) | |
| 199-310, gnl|dasNov1|scaffold_34654 (4110-4248) | |
| 199-310, gnl|echTel1|scaffold_261992 (8895-9026) | |
| 199-310, gnl|fr1|chrUn (167929538-167929409) | |
| 199-310, gnl|galGal2|chr18 (4650471-4650340) | |
| 199-310, gnl|hg17|chr17 (77816838-77816978) | |
| 199-310, gnl|Hg17|chr17 (77816962-77816851) | |
| 199-310, gnl|loxAfr1|scaffold_65184 (4882-4742) | |
| 199-310, gnl|mm7|chr11 (121092274-121092404) | |
| 199-310, gnl|Mm7|chr11 (121092389-121092278) | |
| 199-310, gnl|monDom2|scaffold_18 (16256578-16256729) | |
| 199-310, gnl|oryCun1|scaffold_109586 (3651-3521) | |
| 199-310, gnl|panTro1|chr19 (81589982-81590123) | |
| 199-310, gnl|rheMac2|chr16 (77744539-77744679) | |
| 199-310, gnl|rn3|chr10 (110203537-110203663) | |
| 199-310, gnl|tetNig1|chrUn_random (37838307-37838442) | |
| 199-310, gnl|xenTro1|scaffold_92 (1894757-1894896) | |
| 452-688, gnl|bosTau2|chr19 (44452444-44452208) | |
| 452-688, gnl|canFam2|chr9 (3096646-3096404) | |
| 452-688, gnl|danRer3|chr12 (31399447-31399682) | |
| 452-688, gnl|dasNov1|scaffold_34654 (3745-3971) | |
| 452-688, gnl|echTel1|scaffold_323549 (2414-2168) | |
| 452-688, gnl|fr1|chrUn (167930707-167930468) | |
| 452-688, gnl|galGal2|chr18 (4652780-4652538) | |
| 452-688, gnl|hg17|chr17 (77804177-77804416) | |
| 452-688, gnl|Hg17|chr17 (77804417-77804181) | |
| 452-688, gnl|loxAfr1|scaffold_27359 (27550-27308) | |
| 452-688, gnl|mm7|chr11 (121082007-121082245) | |
| 452-688, gnl|Mm7|chr11 (121082244-121082011) | |
| 452-688, gnl|monDom2|scaffold_18 (16232370-16232608) | |
| 452-688, gnl|oryCun1|scaffold_90015 (331-93) | |
| 452-688, gnl|panTro1|chr19 (81576466-81576705) | |
| 452-688, gnl|rheMac2|chr16 (77733721-77733960) | |
| 452-688, gnl|rn3|chr10 (110192143-110192381) | |
| 452-688, gnl|tetNig1|chrUn_random (37837065-37837304) | |
| 452-688, gnl|xenTro1|scaffold_92 (1892260-1892499) | |
| 465-685, gnl|bosTau2|chr10 (30202523-30202297) | |
| 465-685, gnl|canFam2|chr30 (31702598-31702760) | |
| 465-685, gnl|danRer3|chr7 (53085864-53086033) | |
| 465-685, gnl|dasNov1|scaffold_7616 (39878-39716) | |
| 465-685, gnl|echTel1|scaffold_317194 (43978-43816) | |
| 465-685, gnl|fr1|chrUn (5253000-5252847) | |
| 465-685, gnl|galGal2|chr10 (1383423-1383585) | |
| 465-685, gnl|hg17|chr15 (62293129-62293291) | |
| 465-685, gnl|Hg17|chr15 (62293371-62293145) | |
| 465-685, gnl|loxAfr1|scaffold_4663 (46595-46433) | |
| 465-685, gnl|mm7|chr9 (66031930-66031775) | |
| 465-685, gnl|Mm7|chr9 (66031693-66031919) | |
| 465-685, gnl|monDom2|scaffold_12 (49282514-49282352) | |
| 465-685, gnl|oryCun1|scaffold_145681 (15019-15181) | |
| 465-685, gnl|panTro1|chr16 (62756728-62756890) | |
| 465-685, gnl|rheMac2|chr7 (42612228-42612390) | |
| 465-685, gnl|rn3|chr8 (70294007-70293852) | |
| 465-685, gnl|tetNig1|chr5 (10798575-10798725) | |
| 465-685, gnl|xenTro1|scaffold_295 (306367-306213) | |
| 860-1007, gnl|bosTau2|chr19 (44451250-44451103) | |
| 860-1007, gnl|canFam2|chr9 (3097837-3097734) | |
| 860-1007, gnl|danRer3|chr12 (31395786-31395889) | |
| 860-1007, gnl|dasNov1|scaffold_34654 (3434-3530) | |
| 860-1007, gnl|echTel1|scaffold_314544 (49446-49344) | |
| 860-1007, gnl|fr1|chrUn (167932147-167932044) | |
| 860-1007, gnl|galGal2|chr18 (4654820-4654724) | |
| 860-1007, gnl|hg17|chr17 (77802539-77802642) | |
| 860-1007, gnl|Hg17|chr17 (77802692-77802545) | |
| 860-1007, gnl|loxAfr1|scaffold_27359 (28859-28756) | |
| 860-1007, gnl|mm7|chr11 (121080607-121080710) | |
| 860-1007, gnl|Mm7|chr11 (121080760-121080613) | |
| 860-1007, gnl|monDom2|scaffold_18 (16230544-16230647) | |
| 860-1007, gnl|oryCun1|scaffold_109586 (6790-6686) | |
| 860-1007, gnl|panTro1|chr19 (81574831-81574934) | |
| 860-1007, gnl|rheMac2|chr16 (77732454-77732557) | |
| 860-1007, gnl|rn3|chr10 (110190691-110190795) | |
| 860-1007, gnl|tetNig1|chrUn_random (37836540-37836643) | |
| 860-1007, gnl|xenTro1|scaffold_92 (1887145-1887241) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| fty (0.17584) | |
| ecc (0.115035) |